miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28733 3' -55.4 NC_006146.1 + 65838 0.69 0.799035
Target:  5'- aUGGGCCAguGGUGaugUGGUgccgucccAGCGGACUCa -3'
miRNA:   3'- -ACCUGGU--CCACga-GUCA--------UCGUCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 164275 0.69 0.799035
Target:  5'- aGGucCCGGGUGUUCAcUAGCucAGugUCa -3'
miRNA:   3'- aCCu-GGUCCACGAGUcAUCG--UCugAG- -5'
28733 3' -55.4 NC_006146.1 + 4670 0.68 0.816858
Target:  5'- cUGGGCCGGGUggGCgaggCGGgGGCAGAUc- -3'
miRNA:   3'- -ACCUGGUCCA--CGa---GUCaUCGUCUGag -5'
28733 3' -55.4 NC_006146.1 + 142589 0.68 0.825517
Target:  5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3'
miRNA:   3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 145667 0.68 0.825517
Target:  5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3'
miRNA:   3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 148744 0.68 0.825517
Target:  5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3'
miRNA:   3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 151822 0.68 0.825517
Target:  5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3'
miRNA:   3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 154900 0.68 0.825517
Target:  5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3'
miRNA:   3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 157978 0.68 0.825517
Target:  5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3'
miRNA:   3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 43519 0.68 0.833995
Target:  5'- cGGGCCAGGcUGCcggccaccaUCAGUGG-GGugUCc -3'
miRNA:   3'- aCCUGGUCC-ACG---------AGUCAUCgUCugAG- -5'
28733 3' -55.4 NC_006146.1 + 166334 0.68 0.842286
Target:  5'- aGGcCCGGGUGCUCGGUgaauAGCuGGg-- -3'
miRNA:   3'- aCCuGGUCCACGAGUCA----UCGuCUgag -5'
28733 3' -55.4 NC_006146.1 + 145391 0.68 0.853565
Target:  5'- aGcGCCAGGUGCUCuugggguagggguuGUAGCGGAaggCa -3'
miRNA:   3'- aCcUGGUCCACGAGu-------------CAUCGUCUga-G- -5'
28733 3' -55.4 NC_006146.1 + 33334 0.67 0.86596
Target:  5'- gGGuCCGGGUGCUCcggGGCAGcCg- -3'
miRNA:   3'- aCCuGGUCCACGAGucaUCGUCuGag -5'
28733 3' -55.4 NC_006146.1 + 48339 0.67 0.86596
Target:  5'- gUGGGCCAGGcGUcCAGUcuggccAGCGGGC-Cg -3'
miRNA:   3'- -ACCUGGUCCaCGaGUCA------UCGUCUGaG- -5'
28733 3' -55.4 NC_006146.1 + 38267 0.67 0.880678
Target:  5'- cUGGcuaagcACCuAGG-GCUCuGUGGCAGACa- -3'
miRNA:   3'- -ACC------UGG-UCCaCGAGuCAUCGUCUGag -5'
28733 3' -55.4 NC_006146.1 + 64241 0.67 0.894492
Target:  5'- cUGGGCCGGG-GCgggAGgGGCGuGGCUCg -3'
miRNA:   3'- -ACCUGGUCCaCGag-UCaUCGU-CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 11428 0.67 0.894492
Target:  5'- aGGACCAGGccaaggugGCcaaGGUGGCGGccCUCa -3'
miRNA:   3'- aCCUGGUCCa-------CGag-UCAUCGUCu-GAG- -5'
28733 3' -55.4 NC_006146.1 + 132758 0.67 0.897144
Target:  5'- gGGGCCGGaUGCcgCGGUcccgcacggucgcuGCAGGCUCg -3'
miRNA:   3'- aCCUGGUCcACGa-GUCAu-------------CGUCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 156877 0.66 0.90105
Target:  5'- gGGACaGGGUGgaCGG-GGCuGGACUCg -3'
miRNA:   3'- aCCUGgUCCACgaGUCaUCG-UCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 153799 0.66 0.90105
Target:  5'- gGGACaGGGUGgaCGG-GGCuGGACUCg -3'
miRNA:   3'- aCCUGgUCCACgaGUCaUCG-UCUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.