Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28733 | 5' | -56.1 | NC_006146.1 | + | 5406 | 0.66 | 0.929847 |
Target: 5'- cCGGGGCugCGUC-CU--GCCcUGCUGg -3' miRNA: 3'- -GCCUUGugGCAGaGAcuCGGcACGAC- -5' |
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28733 | 5' | -56.1 | NC_006146.1 | + | 4919 | 0.66 | 0.924597 |
Target: 5'- cCGGAcccuCGCUGUCggguGGCCGUGCUc -3' miRNA: 3'- -GCCUu---GUGGCAGagacUCGGCACGAc -5' |
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28733 | 5' | -56.1 | NC_006146.1 | + | 47633 | 0.66 | 0.924597 |
Target: 5'- aGGGccACgaGCCGUCUCUG-GCCGcgGCc- -3' miRNA: 3'- gCCU--UG--UGGCAGAGACuCGGCa-CGac -5' |
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28733 | 5' | -56.1 | NC_006146.1 | + | 47181 | 0.66 | 0.907446 |
Target: 5'- aGGGugGCUGUCgg-GAGCCcgaGCUGg -3' miRNA: 3'- gCCUugUGGCAGagaCUCGGca-CGAC- -5' |
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28733 | 5' | -56.1 | NC_006146.1 | + | 53711 | 0.67 | 0.894858 |
Target: 5'- gGGGGCAcguuccCCGUcCUCUccggGAGCCGcgGCUGc -3' miRNA: 3'- gCCUUGU------GGCA-GAGA----CUCGGCa-CGAC- -5' |
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28733 | 5' | -56.1 | NC_006146.1 | + | 40130 | 0.67 | 0.8743 |
Target: 5'- uGGGACACCGUCUggagggGGGCUG-GCc- -3' miRNA: 3'- gCCUUGUGGCAGAga----CUCGGCaCGac -5' |
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28733 | 5' | -56.1 | NC_006146.1 | + | 76859 | 0.69 | 0.792928 |
Target: 5'- aGGGAUACgCGgcggcgCUCgGGGCCGUGCc- -3' miRNA: 3'- gCCUUGUG-GCa-----GAGaCUCGGCACGac -5' |
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28733 | 5' | -56.1 | NC_006146.1 | + | 68793 | 0.69 | 0.792928 |
Target: 5'- uGGAACACCaugaucUCUCUG-GCCGUGa-- -3' miRNA: 3'- gCCUUGUGGc-----AGAGACuCGGCACgac -5' |
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28733 | 5' | -56.1 | NC_006146.1 | + | 30278 | 0.71 | 0.697499 |
Target: 5'- aGGAGCGCCGUggucccCUcCUGGGCUucgcugGUGCUGc -3' miRNA: 3'- gCCUUGUGGCA------GA-GACUCGG------CACGAC- -5' |
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28733 | 5' | -56.1 | NC_006146.1 | + | 25050 | 0.74 | 0.536812 |
Target: 5'- uCGGAccaggACAUCGUC-CUGAGC-GUGCUGa -3' miRNA: 3'- -GCCU-----UGUGGCAGaGACUCGgCACGAC- -5' |
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28733 | 5' | -56.1 | NC_006146.1 | + | 166186 | 1.08 | 0.004105 |
Target: 5'- gCGGAACACCGUCUCUGAGCCGUGCUGc -3' miRNA: 3'- -GCCUUGUGGCAGAGACUCGGCACGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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