miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28734 3' -44.3 NC_006146.1 + 163175 0.72 0.998127
Target:  5'- --cUAGcuuucGGUAGCAUAUGCUuUCCu -3'
miRNA:   3'- uaaAUCaac--CCAUCGUAUACGAuAGG- -5'
28734 3' -44.3 NC_006146.1 + 162966 0.76 0.976177
Target:  5'- --aUAGc-GGGUAGCAUAUaCUAUCCu -3'
miRNA:   3'- uaaAUCaaCCCAUCGUAUAcGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 161568 0.78 0.92502
Target:  5'- --cUAGUUGGGUAGUAUGUaCUAcCCg -3'
miRNA:   3'- uaaAUCAACCCAUCGUAUAcGAUaGG- -5'
28734 3' -44.3 NC_006146.1 + 162891 0.79 0.899003
Target:  5'- -------gGGGUAGCAUAUGCUAUCn -3'
miRNA:   3'- uaaaucaaCCCAUCGUAUACGAUAGg -5'
28734 3' -44.3 NC_006146.1 + 163016 0.8 0.876556
Target:  5'- --cUAGcuUUGcGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uaaAUC--AACcCAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163043 0.8 0.860267
Target:  5'- aAUUUAGUUGGGUAGUGUAUaCUAUCn -3'
miRNA:   3'- -UAAAUCAACCCAUCGUAUAcGAUAGg -5'
28734 3' -44.3 NC_006146.1 + 8094 0.68 0.999964
Target:  5'- ------cUGGaUAGCAUAUGCUAcCCg -3'
miRNA:   3'- uaaaucaACCcAUCGUAUACGAUaGG- -5'
28734 3' -44.3 NC_006146.1 + 152895 0.68 0.999964
Target:  5'- -------aGGGUGGCG-AUGCcGUCCa -3'
miRNA:   3'- uaaaucaaCCCAUCGUaUACGaUAGG- -5'
28734 3' -44.3 NC_006146.1 + 139105 0.67 0.999987
Target:  5'- ---gAGUUGGGUuGCGUggGgUGUCa -3'
miRNA:   3'- uaaaUCAACCCAuCGUAuaCgAUAGg -5'
28734 3' -44.3 NC_006146.1 + 69677 0.67 0.999995
Target:  5'- ----uGggGGGUGGCAUAUcugaagGCUG-CCa -3'
miRNA:   3'- uaaauCaaCCCAUCGUAUA------CGAUaGG- -5'
28734 3' -44.3 NC_006146.1 + 7966 0.67 0.999997
Target:  5'- ----------aUAGCAUAUGCUAUCCc -3'
miRNA:   3'- uaaaucaacccAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 154344 0.67 0.999997
Target:  5'- ----cGUUGuGGcacUGGUAgAUGCUGUCCa -3'
miRNA:   3'- uaaauCAAC-CC---AUCGUaUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 8117 0.69 0.999934
Target:  5'- -cUUAucUGGaUAGCAUcUGCUAUCCu -3'
miRNA:   3'- uaAAUcaACCcAUCGUAuACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 43977 0.71 0.998739
Target:  5'- ----uGgcGGGUAaUAUAUGCUAUCCu -3'
miRNA:   3'- uaaauCaaCCCAUcGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 9310 0.72 0.998127
Target:  5'- ---cGGccGGGcAGCAUuUGCUAUCCg -3'
miRNA:   3'- uaaaUCaaCCCaUCGUAuACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 7614 0.76 0.966957
Target:  5'- -----aUUGGGaUAGCAUAUGCUAcCCa -3'
miRNA:   3'- uaaaucAACCC-AUCGUAUACGAUaGG- -5'
28734 3' -44.3 NC_006146.1 + 7500 0.77 0.955463
Target:  5'- --aUAGUaGGaUAGCAUAUGCUAUCa -3'
miRNA:   3'- uaaAUCAaCCcAUCGUAUACGAUAGg -5'
28734 3' -44.3 NC_006146.1 + 7779 0.79 0.891793
Target:  5'- -------aGGGUAGCAUAUGCUA-CCg -3'
miRNA:   3'- uaaaucaaCCCAUCGUAUACGAUaGG- -5'
28734 3' -44.3 NC_006146.1 + 9725 0.81 0.851747
Target:  5'- -cUUGGUcaucuucugGGGUAGUAUAUGCUAUCa -3'
miRNA:   3'- uaAAUCAa--------CCCAUCGUAUACGAUAGg -5'
28734 3' -44.3 NC_006146.1 + 7910 0.66 0.999999
Target:  5'- -------aGGaUAGCAUAUGCUAcCCa -3'
miRNA:   3'- uaaaucaaCCcAUCGUAUACGAUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.