miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28734 3' -44.3 NC_006146.1 + 162835 0.93 0.30716
Target:  5'- --aUAGUUaGGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uaaAUCAAcCCAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163228 0.81 0.824784
Target:  5'- --cUAGcuuucGGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uaaAUCaac--CCAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163368 0.87 0.555925
Target:  5'- ----uGUUaGGGUAGUAUAUGCUAUCCu -3'
miRNA:   3'- uaaauCAA-CCCAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163337 0.9 0.401572
Target:  5'- --cUAGcuUUGGGUAGCAUAUGUUAUCCu -3'
miRNA:   3'- uaaAUC--AACCCAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163202 0.9 0.392259
Target:  5'- aAUUUAGUUGGGUAGUGUAUaCUAUCCu -3'
miRNA:   3'- -UAAAUCAACCCAUCGUAUAcGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163149 0.9 0.392259
Target:  5'- aAUUUAGUUGGGUAGUGUAUaCUAUCCu -3'
miRNA:   3'- -UAAAUCAACCCAUCGUAUAcGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163096 0.9 0.392259
Target:  5'- aAUUUAGUUGGGUAGUGUAUaCUAUCCu -3'
miRNA:   3'- -UAAAUCAACCCAUCGUAUAcGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 162940 0.9 0.392259
Target:  5'- ---aAGUUGGGaUAGCAUAUGCUAUCUu -3'
miRNA:   3'- uaaaUCAACCC-AUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 162909 0.91 0.356443
Target:  5'- --cUAGUacagcUGGGUAGUAUAUGCUGUCCu -3'
miRNA:   3'- uaaAUCA-----ACCCAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163043 0.8 0.860267
Target:  5'- aAUUUAGUUGGGUAGUGUAUaCUAUCn -3'
miRNA:   3'- -UAAAUCAACCCAUCGUAUAcGAUAGg -5'
28734 3' -44.3 NC_006146.1 + 163016 0.8 0.876556
Target:  5'- --cUAGcuUUGcGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uaaAUC--AACcCAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 162891 0.79 0.899003
Target:  5'- -------gGGGUAGCAUAUGCUAUCn -3'
miRNA:   3'- uaaaucaaCCCAUCGUAUACGAUAGg -5'
28734 3' -44.3 NC_006146.1 + 161616 0.67 0.999995
Target:  5'- --------cGGcAGUAUGUGCUAUCCa -3'
miRNA:   3'- uaaaucaacCCaUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 64456 0.67 0.999987
Target:  5'- -----cUUGGGUGGC----GCUGUCCu -3'
miRNA:   3'- uaaaucAACCCAUCGuauaCGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163390 0.69 0.999934
Target:  5'- --cUAGUguaaccuuuUGa-UAGCAUAUGCUAUCCu -3'
miRNA:   3'- uaaAUCA---------ACccAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163311 0.71 0.999172
Target:  5'- aAUUUAGgUGGGUAGUGUAUaCUAUCn -3'
miRNA:   3'- -UAAAUCaACCCAUCGUAUAcGAUAGg -5'
28734 3' -44.3 NC_006146.1 + 163122 0.71 0.999172
Target:  5'- --cUAGcuuucGGUAGCAUAUGCUAcCCu -3'
miRNA:   3'- uaaAUCaac--CCAUCGUAUACGAUaGG- -5'
28734 3' -44.3 NC_006146.1 + 163175 0.72 0.998127
Target:  5'- --cUAGcuuucGGUAGCAUAUGCUuUCCu -3'
miRNA:   3'- uaaAUCaac--CCAUCGUAUACGAuAGG- -5'
28734 3' -44.3 NC_006146.1 + 162966 0.76 0.976177
Target:  5'- --aUAGc-GGGUAGCAUAUaCUAUCCu -3'
miRNA:   3'- uaaAUCaaCCCAUCGUAUAcGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 161568 0.78 0.92502
Target:  5'- --cUAGUUGGGUAGUAUGUaCUAcCCg -3'
miRNA:   3'- uaaAUCAACCCAUCGUAUAcGAUaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.