Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28734 | 5' | -47.8 | NC_006146.1 | + | 162891 | 0.93 | 0.128712 |
Target: 5'- -gGGGUAGCAUAUGCUAUCCUAGUa- -3' miRNA: 3'- aaCCCAUCGUAUACGAUAGGGUUAaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 163372 | 0.89 | 0.211731 |
Target: 5'- -aGGGUAGUAUAUGCUAUCCUAGUg- -3' miRNA: 3'- aaCCCAUCGUAUACGAUAGGGUUAaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 163342 | 0.89 | 0.211731 |
Target: 5'- uUUGGGUAGCAUAUGUUAUCCUGAUa- -3' miRNA: 3'- -AACCCAUCGUAUACGAUAGGGUUAaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 163236 | 0.88 | 0.248309 |
Target: 5'- --cGGUAGCAUAUGCUAUCCUAAUUUa -3' miRNA: 3'- aacCCAUCGUAUACGAUAGGGUUAAA- -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 162812 | 0.86 | 0.328701 |
Target: 5'- -cGGGUAGCAUAUGCUAUCCaGAUa- -3' miRNA: 3'- aaCCCAUCGUAUACGAUAGGgUUAaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 161571 | 0.66 | 0.999 |
Target: 5'- gUUGGGUAGUAUGUaCUA-CCCGc--- -3' miRNA: 3'- -AACCCAUCGUAUAcGAUaGGGUuaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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