Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28734 | 5' | -47.8 | NC_006146.1 | + | 21520 | 0.66 | 0.999192 |
Target: 5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3' miRNA: 3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 18442 | 0.66 | 0.999192 |
Target: 5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3' miRNA: 3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 15364 | 0.66 | 0.999192 |
Target: 5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3' miRNA: 3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 12285 | 0.66 | 0.999192 |
Target: 5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3' miRNA: 3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 37129 | 0.66 | 0.999351 |
Target: 5'- gUGGGUAGCugccucgaGUGUGCcGUgCCGGUc- -3' miRNA: 3'- aACCCAUCG--------UAUACGaUAgGGUUAaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 7505 | 0.66 | 0.999351 |
Target: 5'- -aGGaUAGCAUAUGCUAUCaaaaGGUUa -3' miRNA: 3'- aaCCcAUCGUAUACGAUAGgg--UUAAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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