Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28734 | 5' | -47.8 | NC_006146.1 | + | 162918 | 0.89 | 0.206105 |
Target: 5'- cUGGGUAGUAUAUGCUGUCCUAAa-- -3' miRNA: 3'- aACCCAUCGUAUACGAUAGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 162997 | 0.92 | 0.140079 |
Target: 5'- cUGGGUAGCAUAUGCUAUCCUAGc-- -3' miRNA: 3'- aACCCAUCGUAUACGAUAGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 162891 | 0.93 | 0.128712 |
Target: 5'- -gGGGUAGCAUAUGCUAUCCUAGUa- -3' miRNA: 3'- aaCCCAUCGUAUACGAUAGGGUUAaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 163075 | 0.99 | 0.055544 |
Target: 5'- gUGGGUAGCAUAUGCUAUCCUAAUUUa -3' miRNA: 3'- aACCCAUCGUAUACGAUAGGGUUAAA- -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 163261 | 0.99 | 0.05393 |
Target: 5'- gUUGGGUAGCAUAUGCUAUCCUAAUUUa -3' miRNA: 3'- -AACCCAUCGUAUACGAUAGGGUUAAA- -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 163289 | 1.04 | 0.027209 |
Target: 5'- gUUGGGUAGCAUAUGCUAUCCCAAUUUa -3' miRNA: 3'- -AACCCAUCGUAUACGAUAGGGUUAAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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