Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 112921 | 0.66 | 0.999761 |
Target: 5'- -----aGCUcGUCCUGGUGCGcCUGGa -3' miRNA: 3'- cguauaCGA-UAGGAUCAUGUcGACCc -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 63249 | 0.66 | 0.999616 |
Target: 5'- gGCAUGUGaacGUCCUgAGU--GGCUGGa -3' miRNA: 3'- -CGUAUACga-UAGGA-UCAugUCGACCc -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 162975 | 0.66 | 0.999616 |
Target: 5'- aGCAUAUaCUAUCCUAaUAgAuCUGGGu -3' miRNA: 3'- -CGUAUAcGAUAGGAUcAUgUcGACCC- -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 159590 | 0.66 | 0.999518 |
Target: 5'- uGCAgcUGCUgagGUCCgAGUuguagaacuggcGCuGCUGGGg -3' miRNA: 3'- -CGUauACGA---UAGGaUCA------------UGuCGACCC- -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 8742 | 0.66 | 0.999399 |
Target: 5'- aGCcUAUGCUAUCUacagGGU-CAGaUGGGa -3' miRNA: 3'- -CGuAUACGAUAGGa---UCAuGUCgACCC- -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 86494 | 0.67 | 0.999083 |
Target: 5'- gGCA---GCUGggCCUugAGggGCAGCUGGGc -3' miRNA: 3'- -CGUauaCGAUa-GGA--UCa-UGUCGACCC- -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 163377 | 0.67 | 0.999083 |
Target: 5'- aGUAUAUGCUAUCCUAGUGu------- -3' miRNA: 3'- -CGUAUACGAUAGGAUCAUgucgaccc -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 147317 | 0.67 | 0.999083 |
Target: 5'- ---cGUGCa--CCUGGaagacGCAGCUGGGg -3' miRNA: 3'- cguaUACGauaGGAUCa----UGUCGACCC- -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 161620 | 0.67 | 0.998635 |
Target: 5'- aGUAUGUGCUAUCCaac-ACAGCUa-- -3' miRNA: 3'- -CGUAUACGAUAGGaucaUGUCGAccc -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 92937 | 0.67 | 0.998349 |
Target: 5'- gGguUGUGUUGuUUUUGGUGgAGUUGGGg -3' miRNA: 3'- -CguAUACGAU-AGGAUCAUgUCGACCC- -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 163349 | 0.68 | 0.998013 |
Target: 5'- aGCAUAUGUUAUCCUGaUAU-GUUaGGGu -3' miRNA: 3'- -CGUAUACGAUAGGAUcAUGuCGA-CCC- -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 163003 | 0.68 | 0.998013 |
Target: 5'- aGCAUAUGCUAUCCUAGcuuUGCGu----- -3' miRNA: 3'- -CGUAUACGAUAGGAUC---AUGUcgaccc -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 90048 | 0.68 | 0.997169 |
Target: 5'- aGCAggaggugGUGCUGgagggagCCUAGgagGCGGUgcagGGGg -3' miRNA: 3'- -CGUa------UACGAUa------GGAUCa--UGUCGa---CCC- -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 54701 | 0.68 | 0.997169 |
Target: 5'- aGCAga--CUGUCCUGGUGaaugGGCUGGu -3' miRNA: 3'- -CGUauacGAUAGGAUCAUg---UCGACCc -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 40526 | 0.69 | 0.995362 |
Target: 5'- gGCu--UGCUGUCCagguUGGUcuGCAGCaGGGu -3' miRNA: 3'- -CGuauACGAUAGG----AUCA--UGUCGaCCC- -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 114159 | 0.69 | 0.993703 |
Target: 5'- gGCGcAUGCUGgcCCUGG-GCAGCaGGGu -3' miRNA: 3'- -CGUaUACGAUa-GGAUCaUGUCGaCCC- -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 162845 | 0.7 | 0.988972 |
Target: 5'- aGCAUAUGCUAUCCUAauauuggAUAGCa--- -3' miRNA: 3'- -CGUAUACGAUAGGAUca-----UGUCGaccc -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 43986 | 0.7 | 0.988972 |
Target: 5'- aUAUAUGCUAUCCUcauauuuuuGGgauuugcGCGGCgGGGa -3' miRNA: 3'- cGUAUACGAUAGGA---------UCa------UGUCGaCCC- -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 74824 | 0.72 | 0.965357 |
Target: 5'- cGCAg--GCUcuuaAUCCUGGUguGCAGCccUGGGu -3' miRNA: 3'- -CGUauaCGA----UAGGAUCA--UGUCG--ACCC- -5' |
|||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 162229 | 0.72 | 0.965357 |
Target: 5'- ---gGUGCgAUCCUGG-ACAGCUGcGGu -3' miRNA: 3'- cguaUACGaUAGGAUCaUGUCGAC-CC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home