miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28735 3' -48.1 NC_006146.1 + 112921 0.66 0.999761
Target:  5'- -----aGCUcGUCCUGGUGCGcCUGGa -3'
miRNA:   3'- cguauaCGA-UAGGAUCAUGUcGACCc -5'
28735 3' -48.1 NC_006146.1 + 63249 0.66 0.999616
Target:  5'- gGCAUGUGaacGUCCUgAGU--GGCUGGa -3'
miRNA:   3'- -CGUAUACga-UAGGA-UCAugUCGACCc -5'
28735 3' -48.1 NC_006146.1 + 162975 0.66 0.999616
Target:  5'- aGCAUAUaCUAUCCUAaUAgAuCUGGGu -3'
miRNA:   3'- -CGUAUAcGAUAGGAUcAUgUcGACCC- -5'
28735 3' -48.1 NC_006146.1 + 159590 0.66 0.999518
Target:  5'- uGCAgcUGCUgagGUCCgAGUuguagaacuggcGCuGCUGGGg -3'
miRNA:   3'- -CGUauACGA---UAGGaUCA------------UGuCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 8742 0.66 0.999399
Target:  5'- aGCcUAUGCUAUCUacagGGU-CAGaUGGGa -3'
miRNA:   3'- -CGuAUACGAUAGGa---UCAuGUCgACCC- -5'
28735 3' -48.1 NC_006146.1 + 86494 0.67 0.999083
Target:  5'- gGCA---GCUGggCCUugAGggGCAGCUGGGc -3'
miRNA:   3'- -CGUauaCGAUa-GGA--UCa-UGUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 163377 0.67 0.999083
Target:  5'- aGUAUAUGCUAUCCUAGUGu------- -3'
miRNA:   3'- -CGUAUACGAUAGGAUCAUgucgaccc -5'
28735 3' -48.1 NC_006146.1 + 147317 0.67 0.999083
Target:  5'- ---cGUGCa--CCUGGaagacGCAGCUGGGg -3'
miRNA:   3'- cguaUACGauaGGAUCa----UGUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 161620 0.67 0.998635
Target:  5'- aGUAUGUGCUAUCCaac-ACAGCUa-- -3'
miRNA:   3'- -CGUAUACGAUAGGaucaUGUCGAccc -5'
28735 3' -48.1 NC_006146.1 + 92937 0.67 0.998349
Target:  5'- gGguUGUGUUGuUUUUGGUGgAGUUGGGg -3'
miRNA:   3'- -CguAUACGAU-AGGAUCAUgUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 163349 0.68 0.998013
Target:  5'- aGCAUAUGUUAUCCUGaUAU-GUUaGGGu -3'
miRNA:   3'- -CGUAUACGAUAGGAUcAUGuCGA-CCC- -5'
28735 3' -48.1 NC_006146.1 + 163003 0.68 0.998013
Target:  5'- aGCAUAUGCUAUCCUAGcuuUGCGu----- -3'
miRNA:   3'- -CGUAUACGAUAGGAUC---AUGUcgaccc -5'
28735 3' -48.1 NC_006146.1 + 90048 0.68 0.997169
Target:  5'- aGCAggaggugGUGCUGgagggagCCUAGgagGCGGUgcagGGGg -3'
miRNA:   3'- -CGUa------UACGAUa------GGAUCa--UGUCGa---CCC- -5'
28735 3' -48.1 NC_006146.1 + 54701 0.68 0.997169
Target:  5'- aGCAga--CUGUCCUGGUGaaugGGCUGGu -3'
miRNA:   3'- -CGUauacGAUAGGAUCAUg---UCGACCc -5'
28735 3' -48.1 NC_006146.1 + 40526 0.69 0.995362
Target:  5'- gGCu--UGCUGUCCagguUGGUcuGCAGCaGGGu -3'
miRNA:   3'- -CGuauACGAUAGG----AUCA--UGUCGaCCC- -5'
28735 3' -48.1 NC_006146.1 + 114159 0.69 0.993703
Target:  5'- gGCGcAUGCUGgcCCUGG-GCAGCaGGGu -3'
miRNA:   3'- -CGUaUACGAUa-GGAUCaUGUCGaCCC- -5'
28735 3' -48.1 NC_006146.1 + 162845 0.7 0.988972
Target:  5'- aGCAUAUGCUAUCCUAauauuggAUAGCa--- -3'
miRNA:   3'- -CGUAUACGAUAGGAUca-----UGUCGaccc -5'
28735 3' -48.1 NC_006146.1 + 43986 0.7 0.988972
Target:  5'- aUAUAUGCUAUCCUcauauuuuuGGgauuugcGCGGCgGGGa -3'
miRNA:   3'- cGUAUACGAUAGGA---------UCa------UGUCGaCCC- -5'
28735 3' -48.1 NC_006146.1 + 74824 0.72 0.965357
Target:  5'- cGCAg--GCUcuuaAUCCUGGUguGCAGCccUGGGu -3'
miRNA:   3'- -CGUauaCGA----UAGGAUCA--UGUCG--ACCC- -5'
28735 3' -48.1 NC_006146.1 + 162229 0.72 0.965357
Target:  5'- ---gGUGCgAUCCUGG-ACAGCUGcGGu -3'
miRNA:   3'- cguaUACGaUAGGAUCaUGUCGAC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.