Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28735 | 3' | -48.1 | NC_006146.1 | + | 163408 | 0.8 | 0.69002 |
Target: 5'- aGCAUAUGCUAUCCUAcUAUA-UUGGGg -3' miRNA: 3'- -CGUAUACGAUAGGAUcAUGUcGACCC- -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 163377 | 0.67 | 0.999083 |
Target: 5'- aGUAUAUGCUAUCCUAGUGu------- -3' miRNA: 3'- -CGUAUACGAUAGGAUCAUgucgaccc -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 163349 | 0.68 | 0.998013 |
Target: 5'- aGCAUAUGUUAUCCUGaUAU-GUUaGGGu -3' miRNA: 3'- -CGUAUACGAUAGGAUcAUGuCGA-CCC- -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 163296 | 0.74 | 0.924476 |
Target: 5'- aGCAUAUGCUAUCCcaauuUAGgUGGGu -3' miRNA: 3'- -CGUAUACGAUAGGaucauGUCgACCC- -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 163268 | 0.85 | 0.421213 |
Target: 5'- aGCAUAUGCUAUCCUAauuUAGUUGGGu -3' miRNA: 3'- -CGUAUACGAUAGGAUcauGUCGACCC- -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 163240 | 0.85 | 0.421213 |
Target: 5'- aGCAUAUGCUAUCCUAauuUAGUUGGGu -3' miRNA: 3'- -CGUAUACGAUAGGAUcauGUCGACCC- -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 163187 | 0.76 | 0.846127 |
Target: 5'- aGCAUAUGCUuUCCUAauuUAGUUGGGu -3' miRNA: 3'- -CGUAUACGAuAGGAUcauGUCGACCC- -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 163134 | 0.75 | 0.878072 |
Target: 5'- aGCAUAUGCUAcCCUAauuUAGUUGGGu -3' miRNA: 3'- -CGUAUACGAUaGGAUcauGUCGACCC- -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 163081 | 0.85 | 0.421213 |
Target: 5'- aGCAUAUGCUAUCCUAauuUAGUUGGGu -3' miRNA: 3'- -CGUAUACGAUAGGAUcauGUCGACCC- -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 163028 | 0.85 | 0.421213 |
Target: 5'- aGCAUAUGCUAUCCUAauuUAGUUGGGu -3' miRNA: 3'- -CGUAUACGAUAGGAUcauGUCGACCC- -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 163003 | 0.68 | 0.998013 |
Target: 5'- aGCAUAUGCUAUCCUAGcuuUGCGu----- -3' miRNA: 3'- -CGUAUACGAUAGGAUC---AUGUcgaccc -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 162975 | 0.66 | 0.999616 |
Target: 5'- aGCAUAUaCUAUCCUAaUAgAuCUGGGu -3' miRNA: 3'- -CGUAUAcGAUAGGAUcAUgUcGACCC- -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 162950 | 0.75 | 0.878072 |
Target: 5'- aGCAUAUGCUAUCUUA--AUAGC-GGGu -3' miRNA: 3'- -CGUAUACGAUAGGAUcaUGUCGaCCC- -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 162924 | 0.79 | 0.711172 |
Target: 5'- aGUAUAUGCUGUCCUAa---AGUUGGGa -3' miRNA: 3'- -CGUAUACGAUAGGAUcaugUCGACCC- -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 162896 | 1.14 | 0.009008 |
Target: 5'- aGCAUAUGCUAUCCUAGUACAGCUGGGu -3' miRNA: 3'- -CGUAUACGAUAGGAUCAUGUCGACCC- -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 162845 | 0.7 | 0.988972 |
Target: 5'- aGCAUAUGCUAUCCUAauauuggAUAGCa--- -3' miRNA: 3'- -CGUAUACGAUAGGAUca-----UGUCGaccc -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 162817 | 0.73 | 0.945223 |
Target: 5'- aGCAUAUGCUAUCC-AGaUAUAGUUaGGu -3' miRNA: 3'- -CGUAUACGAUAGGaUC-AUGUCGAcCC- -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 162229 | 0.72 | 0.965357 |
Target: 5'- ---gGUGCgAUCCUGG-ACAGCUGcGGu -3' miRNA: 3'- cguaUACGaUAGGAUCaUGUCGAC-CC- -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 161620 | 0.67 | 0.998635 |
Target: 5'- aGUAUGUGCUAUCCaac-ACAGCUa-- -3' miRNA: 3'- -CGUAUACGAUAGGaucaUGUCGAccc -5' |
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28735 | 3' | -48.1 | NC_006146.1 | + | 159590 | 0.66 | 0.999518 |
Target: 5'- uGCAgcUGCUgagGUCCgAGUuguagaacuggcGCuGCUGGGg -3' miRNA: 3'- -CGUauACGA---UAGGaUCA------------UGuCGACCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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