Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 7494 | 0.66 | 0.999947 |
Target: 5'- -cCCaaUAuAGUa-GGAUAGCAUAUGCUa -3' miRNA: 3'- caGG--AUuUCAacCCUAUCGUAUACGA- -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 163387 | 0.66 | 0.999906 |
Target: 5'- aUCCUAGuGUaaccuuuuGAUAGCAUAUGCUa -3' miRNA: 3'- cAGGAUUuCAacc-----CUAUCGUAUACGA- -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 7771 | 0.66 | 0.999906 |
Target: 5'- --aCUAAA-UUaGGGUAGCAUAUGCUa -3' miRNA: 3'- cagGAUUUcAAcCCUAUCGUAUACGA- -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 138337 | 0.66 | 0.999839 |
Target: 5'- gGUCCgcGAGauUUGGGGUAGCGga-GCc -3' miRNA: 3'- -CAGGauUUC--AACCCUAUCGUauaCGa -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 163197 | 0.66 | 0.999835 |
Target: 5'- uUCCUAAuuuAGUUGGGuaguguauacuAuccuagcuuucggUAGCAUAUGCUn -3' miRNA: 3'- cAGGAUU---UCAACCC-----------U-------------AUCGUAUACGA- -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 162906 | 0.67 | 0.999659 |
Target: 5'- aUCCUAGuacAGcUGGG-UAGUAUAUGCn -3' miRNA: 3'- cAGGAUU---UCaACCCuAUCGUAUACGa -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 7824 | 0.67 | 0.999568 |
Target: 5'- --aCUAAA-UUaGGAUAGCAUAUGCUa -3' miRNA: 3'- cagGAUUUcAAcCCUAUCGUAUACGA- -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 7665 | 0.67 | 0.999568 |
Target: 5'- --aCUAAA-UUaGGAUAGCAUAUGCUa -3' miRNA: 3'- cagGAUUUcAAcCCUAUCGUAUACGA- -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 7637 | 0.67 | 0.999568 |
Target: 5'- --aCUAAA-UUaGGAUAGCAUAUGCUa -3' miRNA: 3'- cagGAUUUcAAcCCUAUCGUAUACGA- -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 7877 | 0.67 | 0.999568 |
Target: 5'- --aCUAAA-UUaGGAUAGCAUAUGCUa -3' miRNA: 3'- cagGAUUUcAAcCCUAUCGUAUACGA- -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 43943 | 0.68 | 0.999457 |
Target: 5'- uUUgaAAAGgcgcGGGAUAGUGUAUGCUa -3' miRNA: 3'- cAGgaUUUCaa--CCCUAUCGUAUACGA- -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 163091 | 0.68 | 0.99894 |
Target: 5'- aUCCUAAuuuAGUUGGGuaguguauacuAuccuagcuuucggUAGCAUAUGCUa -3' miRNA: 3'- cAGGAUU---UCAACCC-----------U-------------AUCGUAUACGA- -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 139100 | 0.69 | 0.998449 |
Target: 5'- -gCCUGGAGUUGGGuu-GCGUGggGUg -3' miRNA: 3'- caGGAUUUCAACCCuauCGUAUa-CGa -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 8082 | 0.69 | 0.99805 |
Target: 5'- -aCCUAAcuauaucuGGAUAGCAUAUGCUa -3' miRNA: 3'- caGGAUUucaac---CCUAUCGUAUACGA- -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 163038 | 0.71 | 0.990949 |
Target: 5'- aUCCUAAuuuaguuggguAGUguauacuaucauagcUGuGGGUAGCAUAUGCUa -3' miRNA: 3'- cAGGAUU-----------UCA---------------AC-CCUAUCGUAUACGA- -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 9723 | 0.72 | 0.976616 |
Target: 5'- -gCCUu-GGUcaucuucUGGGGUAGUAUAUGCUa -3' miRNA: 3'- caGGAuuUCA-------ACCCUAUCGUAUACGA- -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 163334 | 0.74 | 0.960899 |
Target: 5'- aUCCUAGcuUUGGG-UAGCAUAUGUUn -3' miRNA: 3'- cAGGAUUucAACCCuAUCGUAUACGA- -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 8138 | 0.74 | 0.948296 |
Target: 5'- aUCCUAAuuGUUGG--UAGCGUAUGCUa -3' miRNA: 3'- cAGGAUUu-CAACCcuAUCGUAUACGA- -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 162985 | 0.74 | 0.948296 |
Target: 5'- aUCCUAAuAGaucUGGG-UAGCAUAUGCUa -3' miRNA: 3'- cAGGAUU-UCa--ACCCuAUCGUAUACGA- -5' |
|||||||
28735 | 5' | -46.6 | NC_006146.1 | + | 162743 | 0.76 | 0.902644 |
Target: 5'- gGUCCUAguauAGGUUuGGAUAGCAUAcGCUa -3' miRNA: 3'- -CAGGAU----UUCAAcCCUAUCGUAUaCGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home