miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28735 5' -46.6 NC_006146.1 + 7494 0.66 0.999947
Target:  5'- -cCCaaUAuAGUa-GGAUAGCAUAUGCUa -3'
miRNA:   3'- caGG--AUuUCAacCCUAUCGUAUACGA- -5'
28735 5' -46.6 NC_006146.1 + 163387 0.66 0.999906
Target:  5'- aUCCUAGuGUaaccuuuuGAUAGCAUAUGCUa -3'
miRNA:   3'- cAGGAUUuCAacc-----CUAUCGUAUACGA- -5'
28735 5' -46.6 NC_006146.1 + 7771 0.66 0.999906
Target:  5'- --aCUAAA-UUaGGGUAGCAUAUGCUa -3'
miRNA:   3'- cagGAUUUcAAcCCUAUCGUAUACGA- -5'
28735 5' -46.6 NC_006146.1 + 138337 0.66 0.999839
Target:  5'- gGUCCgcGAGauUUGGGGUAGCGga-GCc -3'
miRNA:   3'- -CAGGauUUC--AACCCUAUCGUauaCGa -5'
28735 5' -46.6 NC_006146.1 + 163197 0.66 0.999835
Target:  5'- uUCCUAAuuuAGUUGGGuaguguauacuAuccuagcuuucggUAGCAUAUGCUn -3'
miRNA:   3'- cAGGAUU---UCAACCC-----------U-------------AUCGUAUACGA- -5'
28735 5' -46.6 NC_006146.1 + 162906 0.67 0.999659
Target:  5'- aUCCUAGuacAGcUGGG-UAGUAUAUGCn -3'
miRNA:   3'- cAGGAUU---UCaACCCuAUCGUAUACGa -5'
28735 5' -46.6 NC_006146.1 + 7877 0.67 0.999568
Target:  5'- --aCUAAA-UUaGGAUAGCAUAUGCUa -3'
miRNA:   3'- cagGAUUUcAAcCCUAUCGUAUACGA- -5'
28735 5' -46.6 NC_006146.1 + 7824 0.67 0.999568
Target:  5'- --aCUAAA-UUaGGAUAGCAUAUGCUa -3'
miRNA:   3'- cagGAUUUcAAcCCUAUCGUAUACGA- -5'
28735 5' -46.6 NC_006146.1 + 7665 0.67 0.999568
Target:  5'- --aCUAAA-UUaGGAUAGCAUAUGCUa -3'
miRNA:   3'- cagGAUUUcAAcCCUAUCGUAUACGA- -5'
28735 5' -46.6 NC_006146.1 + 7637 0.67 0.999568
Target:  5'- --aCUAAA-UUaGGAUAGCAUAUGCUa -3'
miRNA:   3'- cagGAUUUcAAcCCUAUCGUAUACGA- -5'
28735 5' -46.6 NC_006146.1 + 43943 0.68 0.999457
Target:  5'- uUUgaAAAGgcgcGGGAUAGUGUAUGCUa -3'
miRNA:   3'- cAGgaUUUCaa--CCCUAUCGUAUACGA- -5'
28735 5' -46.6 NC_006146.1 + 163091 0.68 0.99894
Target:  5'- aUCCUAAuuuAGUUGGGuaguguauacuAuccuagcuuucggUAGCAUAUGCUa -3'
miRNA:   3'- cAGGAUU---UCAACCC-----------U-------------AUCGUAUACGA- -5'
28735 5' -46.6 NC_006146.1 + 139100 0.69 0.998449
Target:  5'- -gCCUGGAGUUGGGuu-GCGUGggGUg -3'
miRNA:   3'- caGGAUUUCAACCCuauCGUAUa-CGa -5'
28735 5' -46.6 NC_006146.1 + 8082 0.69 0.99805
Target:  5'- -aCCUAAcuauaucuGGAUAGCAUAUGCUa -3'
miRNA:   3'- caGGAUUucaac---CCUAUCGUAUACGA- -5'
28735 5' -46.6 NC_006146.1 + 163038 0.71 0.990949
Target:  5'- aUCCUAAuuuaguuggguAGUguauacuaucauagcUGuGGGUAGCAUAUGCUa -3'
miRNA:   3'- cAGGAUU-----------UCA---------------AC-CCUAUCGUAUACGA- -5'
28735 5' -46.6 NC_006146.1 + 9723 0.72 0.976616
Target:  5'- -gCCUu-GGUcaucuucUGGGGUAGUAUAUGCUa -3'
miRNA:   3'- caGGAuuUCA-------ACCCUAUCGUAUACGA- -5'
28735 5' -46.6 NC_006146.1 + 163334 0.74 0.960899
Target:  5'- aUCCUAGcuUUGGG-UAGCAUAUGUUn -3'
miRNA:   3'- cAGGAUUucAACCCuAUCGUAUACGA- -5'
28735 5' -46.6 NC_006146.1 + 8138 0.74 0.948296
Target:  5'- aUCCUAAuuGUUGG--UAGCGUAUGCUa -3'
miRNA:   3'- cAGGAUUu-CAACCcuAUCGUAUACGA- -5'
28735 5' -46.6 NC_006146.1 + 162985 0.74 0.948296
Target:  5'- aUCCUAAuAGaucUGGG-UAGCAUAUGCUa -3'
miRNA:   3'- cAGGAUU-UCa--ACCCuAUCGUAUACGA- -5'
28735 5' -46.6 NC_006146.1 + 162743 0.76 0.902644
Target:  5'- gGUCCUAguauAGGUUuGGAUAGCAUAcGCUa -3'
miRNA:   3'- -CAGGAU----UUCAAcCCUAUCGUAUaCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.