miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28736 5' -44.2 NC_006146.1 + 43955 0.73 0.992851
Target:  5'- -cGGGaUAGUGUAUGCUA-CCUGAUGg -3'
miRNA:   3'- aaUCC-AUCGUAUACGAUaGGAUUAUa -5'
28736 5' -44.2 NC_006146.1 + 127799 0.73 0.992851
Target:  5'- uUUAGGaAGCAggggGCUGUCCUGAa-- -3'
miRNA:   3'- -AAUCCaUCGUaua-CGAUAGGAUUaua -5'
28736 5' -44.2 NC_006146.1 + 7503 0.73 0.990364
Target:  5'- gUAGGaUAGCAUAUGCUAUCa------ -3'
miRNA:   3'- aAUCC-AUCGUAUACGAUAGgauuaua -5'
28736 5' -44.2 NC_006146.1 + 8122 0.73 0.990364
Target:  5'- cUGGaUAGCAUcUGCUAUCCUAAUu- -3'
miRNA:   3'- aAUCcAUCGUAuACGAUAGGAUUAua -5'
28736 5' -44.2 NC_006146.1 + 8014 0.74 0.985415
Target:  5'- cUAGGaUAGCAUAUGCUAcCCcAAUAUu -3'
miRNA:   3'- aAUCC-AUCGUAUACGAUaGGaUUAUA- -5'
28736 5' -44.2 NC_006146.1 + 163208 0.74 0.983394
Target:  5'- gUUGGGUAGUGUAUaCUAUCCUAGc-- -3'
miRNA:   3'- -AAUCCAUCGUAUAcGAUAGGAUUaua -5'
28736 5' -44.2 NC_006146.1 + 163155 0.74 0.983394
Target:  5'- gUUGGGUAGUGUAUaCUAUCCUAGc-- -3'
miRNA:   3'- -AAUCCAUCGUAUAcGAUAGGAUUaua -5'
28736 5' -44.2 NC_006146.1 + 163102 0.74 0.983394
Target:  5'- gUUGGGUAGUGUAUaCUAUCCUAGc-- -3'
miRNA:   3'- -AAUCCAUCGUAUAcGAUAGGAUUaua -5'
28736 5' -44.2 NC_006146.1 + 9739 0.75 0.978727
Target:  5'- -gGGGUAGUAUAUGCUAUCa------ -3'
miRNA:   3'- aaUCCAUCGUAUACGAUAGgauuaua -5'
28736 5' -44.2 NC_006146.1 + 7779 0.75 0.97
Target:  5'- -aGGGUAGCAUAUGCUA-CCg----- -3'
miRNA:   3'- aaUCCAUCGUAUACGAUaGGauuaua -5'
28736 5' -44.2 NC_006146.1 + 163406 0.76 0.962917
Target:  5'- ----aUAGCAUAUGCUAUCCUAcUAUa -3'
miRNA:   3'- aauccAUCGUAUACGAUAGGAUuAUA- -5'
28736 5' -44.2 NC_006146.1 + 162781 0.76 0.950236
Target:  5'- aUUAGGaUAGCAgAUGCUAUCCaGAUAa -3'
miRNA:   3'- -AAUCC-AUCGUaUACGAUAGGaUUAUa -5'
28736 5' -44.2 NC_006146.1 + 8064 0.77 0.929259
Target:  5'- aUUAGGaUAGCAUAUGCUA-CCUAAc-- -3'
miRNA:   3'- -AAUCC-AUCGUAUACGAUaGGAUUaua -5'
28736 5' -44.2 NC_006146.1 + 163130 0.81 0.779376
Target:  5'- --cGGUAGCAUAUGCUAcCCUAAUu- -3'
miRNA:   3'- aauCCAUCGUAUACGAUaGGAUUAua -5'
28736 5' -44.2 NC_006146.1 + 8149 0.82 0.768901
Target:  5'- --uGGUAGCGUAUGCUAUCCa----- -3'
miRNA:   3'- aauCCAUCGUAUACGAUAGGauuaua -5'
28736 5' -44.2 NC_006146.1 + 163183 0.82 0.736611
Target:  5'- --cGGUAGCAUAUGCUuUCCUAAUu- -3'
miRNA:   3'- aauCCAUCGUAUACGAuAGGAUUAua -5'
28736 5' -44.2 NC_006146.1 + 163025 0.83 0.680685
Target:  5'- ---cGUAGCAUAUGCUAUCCUAAUu- -3'
miRNA:   3'- aaucCAUCGUAUACGAUAGGAUUAua -5'
28736 5' -44.2 NC_006146.1 + 162970 0.85 0.589184
Target:  5'- -cGGGUAGCAUAUaCUAUCCUAAUAg -3'
miRNA:   3'- aaUCCAUCGUAUAcGAUAGGAUUAUa -5'
28736 5' -44.2 NC_006146.1 + 163289 0.88 0.467088
Target:  5'- gUUGGGUAGCAUAUGCUAUCCcaauuuaggugggUAGUGUa -3'
miRNA:   3'- -AAUCCAUCGUAUACGAUAGG-------------AUUAUA- -5'
28736 5' -44.2 NC_006146.1 + 162942 0.88 0.457727
Target:  5'- gUUGGGaUAGCAUAUGCUAUCUUAAUAg -3'
miRNA:   3'- -AAUCC-AUCGUAUACGAUAGGAUUAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.