miRNA display CGI


Results 101 - 120 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 51828 0.67 0.906409
Target:  5'- cCCCggGGCGGCGUGGAGGGgGGCUCg -3'
miRNA:   3'- cGGGa-UUGUCGUGUCUCUCgCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 69834 0.67 0.906409
Target:  5'- uGCCCc-ACAGCAU-GAGcccGUGGCCCUg -3'
miRNA:   3'- -CGGGauUGUCGUGuCUCu--CGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 87458 0.67 0.906409
Target:  5'- gGCCCUGucccuGCAGUACuacGAGGGC-AUCUCu -3'
miRNA:   3'- -CGGGAU-----UGUCGUGu--CUCUCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 102847 0.67 0.906409
Target:  5'- cCCCUGuugGCAGC-CAGGGcAGCcGCCaCCu -3'
miRNA:   3'- cGGGAU---UGUCGuGUCUC-UCGcUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 129564 0.67 0.905795
Target:  5'- gGCCCUGggccagauagguuGgGGCgcgaaACAGGGAGgGACgCCa -3'
miRNA:   3'- -CGGGAU-------------UgUCG-----UGUCUCUCgCUGgGG- -5'
28737 5' -55.4 NC_006146.1 + 45557 0.67 0.900794
Target:  5'- cGCCCUGGCcuccgcgaggagcucGCGCAGccaGGCGGCCUg -3'
miRNA:   3'- -CGGGAUUGu--------------CGUGUCuc-UCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 128497 0.67 0.900159
Target:  5'- cGCCUUcgagGACGGCGuCGGgguggcccuGGGGCG-CCCCu -3'
miRNA:   3'- -CGGGA----UUGUCGU-GUC---------UCUCGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 28406 0.67 0.900159
Target:  5'- cGCCCgggucucuGCuGGCAgAGucuGAGCGAUCCUc -3'
miRNA:   3'- -CGGGau------UG-UCGUgUCu--CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 22250 0.67 0.900159
Target:  5'- cGCCCgggucucuGCuGGCAgAGucuGAGCGAUCCUc -3'
miRNA:   3'- -CGGGau------UG-UCGUgUCu--CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 59778 0.67 0.900159
Target:  5'- -aCCUGGgGGUugAGGGuGuCGACCCg -3'
miRNA:   3'- cgGGAUUgUCGugUCUCuC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 94016 0.67 0.900159
Target:  5'- uCCCacguGCGGCccgGCAGGGGcaCGGCCCCg -3'
miRNA:   3'- cGGGau--UGUCG---UGUCUCUc-GCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 16094 0.67 0.900159
Target:  5'- cGCCCgggucucuGCuGGCAgAGucuGAGCGAUCCUc -3'
miRNA:   3'- -CGGGau------UG-UCGUgUCu--CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 84275 0.67 0.900159
Target:  5'- gGCCCc--CAGCaACAGGGuGaUGAUCCCu -3'
miRNA:   3'- -CGGGauuGUCG-UGUCUCuC-GCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 12021 0.67 0.900159
Target:  5'- uGCCCgagaccGGCAGCuACGuggcGGGuGCGGCCaCCa -3'
miRNA:   3'- -CGGGa-----UUGUCG-UGU----CUCuCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 44946 0.67 0.900159
Target:  5'- gGCCa--GgGGCGCGGGGAG--GCCCCg -3'
miRNA:   3'- -CGGgauUgUCGUGUCUCUCgcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 25328 0.67 0.900159
Target:  5'- cGCCCgggucucuGCuGGCAgAGucuGAGCGAUCCUc -3'
miRNA:   3'- -CGGGau------UG-UCGUgUCu--CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 13016 0.67 0.900159
Target:  5'- cGCCCgggucucuGCuGGCAgAGucuGAGCGAUCCUc -3'
miRNA:   3'- -CGGGau------UG-UCGUgUCu--CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 19172 0.67 0.900159
Target:  5'- cGCCCgggucucuGCuGGCAgAGucuGAGCGAUCCUc -3'
miRNA:   3'- -CGGGau------UG-UCGUgUCu--CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 20407 0.67 0.896947
Target:  5'- uGCCCUccgccuccgacaggGACGGCuacCAGGGGGCcacugucauccaGCCCCu -3'
miRNA:   3'- -CGGGA--------------UUGUCGu--GUCUCUCGc-----------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 159230 0.67 0.893678
Target:  5'- gGCCUacuUGGCcGCAUGGcGAG-GACCCCg -3'
miRNA:   3'- -CGGG---AUUGuCGUGUCuCUCgCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.