miRNA display CGI


Results 81 - 100 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 13456 0.67 0.912428
Target:  5'- aCCCcGGCAGC-Cc--GGGUGGCCCCa -3'
miRNA:   3'- cGGGaUUGUCGuGucuCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 22690 0.67 0.912428
Target:  5'- aCCCcGGCAGC-Cc--GGGUGGCCCCa -3'
miRNA:   3'- cGGGaUUGUCGuGucuCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 115679 0.67 0.912428
Target:  5'- -aCCUGAgGGCggagGCAGAG-GCGGCCg- -3'
miRNA:   3'- cgGGAUUgUCG----UGUCUCuCGCUGGgg -5'
28737 5' -55.4 NC_006146.1 + 107586 0.67 0.912428
Target:  5'- cGCCacGGCGGUcagaauGCAGAGGGUGGCCa- -3'
miRNA:   3'- -CGGgaUUGUCG------UGUCUCUCGCUGGgg -5'
28737 5' -55.4 NC_006146.1 + 41085 0.67 0.912428
Target:  5'- gGCCaggGACAGCGaGGGGAGCcaggcgugcagGGCCuCCa -3'
miRNA:   3'- -CGGga-UUGUCGUgUCUCUCG-----------CUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 16534 0.67 0.912428
Target:  5'- aCCCcGGCAGC-Cc--GGGUGGCCCCa -3'
miRNA:   3'- cGGGaUUGUCGuGucuCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 19612 0.67 0.912428
Target:  5'- aCCCcGGCAGC-Cc--GGGUGGCCCCa -3'
miRNA:   3'- cGGGaUUGUCGuGucuCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 152372 0.67 0.911243
Target:  5'- aGCCCgugacucuggagGACGGggaCGCGGAGGGCcugaGGCCCa -3'
miRNA:   3'- -CGGGa-----------UUGUC---GUGUCUCUCG----CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 158529 0.67 0.911243
Target:  5'- aGCCCgugacucuggagGACGGggaCGCGGAGGGCcugaGGCCCa -3'
miRNA:   3'- -CGGGa-----------UUGUC---GUGUCUCUCG----CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 155450 0.67 0.911243
Target:  5'- aGCCCgugacucuggagGACGGggaCGCGGAGGGCcugaGGCCCa -3'
miRNA:   3'- -CGGGa-----------UUGUC---GUGUCUCUCG----CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 149294 0.67 0.911243
Target:  5'- aGCCCgugacucuggagGACGGggaCGCGGAGGGCcugaGGCCCa -3'
miRNA:   3'- -CGGGa-----------UUGUC---GUGUCUCUCG----CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 146216 0.67 0.911243
Target:  5'- aGCCCgugacucuggagGACGGggaCGCGGAGGGCcugaGGCCCa -3'
miRNA:   3'- -CGGGa-----------UUGUC---GUGUCUCUCG----CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 143138 0.67 0.911243
Target:  5'- aGCCCgugacucuggagGACGGggaCGCGGAGGGCcugaGGCCCa -3'
miRNA:   3'- -CGGGa-----------UUGUC---GUGUCUCUCG----CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 70854 0.67 0.906409
Target:  5'- aGCCCUcuuccCGGCGCAGgugguuugucAGGGCugcuCCCCg -3'
miRNA:   3'- -CGGGAuu---GUCGUGUC----------UCUCGcu--GGGG- -5'
28737 5' -55.4 NC_006146.1 + 143630 0.67 0.906409
Target:  5'- aGCCggcgaUGACGGU--GGAG-GUGGCCCCg -3'
miRNA:   3'- -CGGg----AUUGUCGugUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 146707 0.67 0.906409
Target:  5'- aGCCggcgaUGACGGU--GGAG-GUGGCCCCg -3'
miRNA:   3'- -CGGg----AUUGUCGugUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 149785 0.67 0.906409
Target:  5'- aGCCggcgaUGACGGU--GGAG-GUGGCCCCg -3'
miRNA:   3'- -CGGg----AUUGUCGugUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 152863 0.67 0.906409
Target:  5'- aGCCggcgaUGACGGU--GGAG-GUGGCCCCg -3'
miRNA:   3'- -CGGg----AUUGUCGugUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 155941 0.67 0.906409
Target:  5'- aGCCggcgaUGACGGU--GGAG-GUGGCCCCg -3'
miRNA:   3'- -CGGg----AUUGUCGugUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 51828 0.67 0.906409
Target:  5'- cCCCggGGCGGCGUGGAGGGgGGCUCg -3'
miRNA:   3'- cGGGa-UUGUCGUGUCUCUCgCUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.