miRNA display CGI


Results 61 - 80 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 115718 0.66 0.929072
Target:  5'- cGCCCgccGCGGcCGCAGccugGGAcGCGgucACCCCc -3'
miRNA:   3'- -CGGGau-UGUC-GUGUC----UCU-CGC---UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 97047 0.66 0.92376
Target:  5'- -aCCUGACGG-ACcugugGGAGAGCGAgCUCu -3'
miRNA:   3'- cgGGAUUGUCgUG-----UCUCUCGCUgGGG- -5'
28737 5' -55.4 NC_006146.1 + 56950 0.66 0.92376
Target:  5'- cCCCUcuucCAGUucaAGcAGAGCGACCCg -3'
miRNA:   3'- cGGGAuu--GUCGug-UC-UCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 153927 0.66 0.92376
Target:  5'- cGCCCUuGCcuggaGGCAgAGAcuGGGCGGCUgCg -3'
miRNA:   3'- -CGGGAuUG-----UCGUgUCU--CUCGCUGGgG- -5'
28737 5' -55.4 NC_006146.1 + 157005 0.66 0.92376
Target:  5'- cGCCCUuGCcuggaGGCAgAGAcuGGGCGGCUgCg -3'
miRNA:   3'- -CGGGAuUG-----UCGUgUCU--CUCGCUGGgG- -5'
28737 5' -55.4 NC_006146.1 + 123289 0.66 0.92376
Target:  5'- gGCCCUAuCGGCGaucccuGGCGGCCgCCg -3'
miRNA:   3'- -CGGGAUuGUCGUgucuc-UCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 150849 0.66 0.92376
Target:  5'- cGCCCUuGCcuggaGGCAgAGAcuGGGCGGCUgCg -3'
miRNA:   3'- -CGGGAuUG-----UCGUgUCU--CUCGCUGGgG- -5'
28737 5' -55.4 NC_006146.1 + 147771 0.66 0.92376
Target:  5'- cGCCCUuGCcuggaGGCAgAGAcuGGGCGGCUgCg -3'
miRNA:   3'- -CGGGAuUG-----UCGUgUCU--CUCGCUGGgG- -5'
28737 5' -55.4 NC_006146.1 + 141616 0.66 0.92376
Target:  5'- cGCCCUuGCcuggaGGCAgAGAcuGGGCGGCUgCg -3'
miRNA:   3'- -CGGGAuUG-----UCGUgUCU--CUCGCUGGgG- -5'
28737 5' -55.4 NC_006146.1 + 62734 0.66 0.92376
Target:  5'- uGCCCagGAUAGC-CGGAGccccGCGgACCCa -3'
miRNA:   3'- -CGGGa-UUGUCGuGUCUCu---CGC-UGGGg -5'
28737 5' -55.4 NC_006146.1 + 137626 0.67 0.920459
Target:  5'- uGCCC-AGCcgGGCcaccccccacccggaGCGGGGcAGCGGCCCg -3'
miRNA:   3'- -CGGGaUUG--UCG---------------UGUCUC-UCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 137749 0.67 0.920459
Target:  5'- uGCCC-AGCcgGGCcaccccccacccggaGCGGGGcAGCGGCCCg -3'
miRNA:   3'- -CGGGaUUG--UCG---------------UGUCUC-UCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 96643 0.67 0.918212
Target:  5'- gGCUCUuuggcCAGCcCGGGGAGaCGGCCgCg -3'
miRNA:   3'- -CGGGAuu---GUCGuGUCUCUC-GCUGGgG- -5'
28737 5' -55.4 NC_006146.1 + 12957 0.67 0.918212
Target:  5'- gGCCUUGGggUAGCucuggaguCAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUU--GUCGu-------GUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 118433 0.67 0.918212
Target:  5'- uCCCUGGCcgagguccuGCACGGcggcuacaacGGGGUGGCCCa -3'
miRNA:   3'- cGGGAUUGu--------CGUGUC----------UCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 92217 0.67 0.918212
Target:  5'- gGCCUggGGCuGCuGCuGGGGGGCGGgCCCg -3'
miRNA:   3'- -CGGGa-UUGuCG-UG-UCUCUCGCUgGGG- -5'
28737 5' -55.4 NC_006146.1 + 102731 0.67 0.918212
Target:  5'- cGUCCUGACGcuGCGCcugcccggGGAGgaGGCaGCCCCu -3'
miRNA:   3'- -CGGGAUUGU--CGUG--------UCUC--UCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 136724 0.67 0.918212
Target:  5'- gGCCCagggucCGGCu--GGGGGCGcACCCCc -3'
miRNA:   3'- -CGGGauu---GUCGuguCUCUCGC-UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 28846 0.67 0.912428
Target:  5'- aCCCcGGCAGC-Cc--GGGUGGCCCCa -3'
miRNA:   3'- cGGGaUUGUCGuGucuCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 41085 0.67 0.912428
Target:  5'- gGCCaggGACAGCGaGGGGAGCcaggcgugcagGGCCuCCa -3'
miRNA:   3'- -CGGga-UUGUCGUgUCUCUCG-----------CUGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.