miRNA display CGI


Results 61 - 80 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 40140 0.72 0.674421
Target:  5'- uGUCCUuGCGGUACAGGGcGGCGucuuCUCCg -3'
miRNA:   3'- -CGGGAuUGUCGUGUCUC-UCGCu---GGGG- -5'
28737 5' -55.4 NC_006146.1 + 40425 0.66 0.938986
Target:  5'- aGCCacc-CGGgGCGGc-AGCGGCCCCg -3'
miRNA:   3'- -CGGgauuGUCgUGUCucUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 40822 0.66 0.932649
Target:  5'- gGCCUUGGCcaugagcuugguaaGGgGCAGGGGGCGcucuuggagGCCCg -3'
miRNA:   3'- -CGGGAUUG--------------UCgUGUCUCUCGC---------UGGGg -5'
28737 5' -55.4 NC_006146.1 + 41085 0.67 0.912428
Target:  5'- gGCCaggGACAGCGaGGGGAGCcaggcgugcagGGCCuCCa -3'
miRNA:   3'- -CGGga-UUGUCGUgUCUCUCG-----------CUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 41221 0.66 0.938986
Target:  5'- aUCgaGGCGGCGCugaAGAGAcCGGCCCUg -3'
miRNA:   3'- cGGgaUUGUCGUG---UCUCUcGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 41494 0.71 0.724362
Target:  5'- gGCCUUGGgGuGCGCGGGGA-CGACgCCCg -3'
miRNA:   3'- -CGGGAUUgU-CGUGUCUCUcGCUG-GGG- -5'
28737 5' -55.4 NC_006146.1 + 41894 0.72 0.643975
Target:  5'- cGUUCguguuuCAGCGCAGuAGcGCGACCCCc -3'
miRNA:   3'- -CGGGauu---GUCGUGUC-UCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 43060 0.66 0.938986
Target:  5'- -gCCUGGCGGUugAGGGgugccAGCGACUg- -3'
miRNA:   3'- cgGGAUUGUCGugUCUC-----UCGCUGGgg -5'
28737 5' -55.4 NC_006146.1 + 43242 0.66 0.940857
Target:  5'- cCCCUGgaGCAGCAgaUAGcccaccgagaggcacAGGGCGGCCUg -3'
miRNA:   3'- cGGGAU--UGUCGU--GUC---------------UCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 44946 0.67 0.900159
Target:  5'- gGCCa--GgGGCGCGGGGAG--GCCCCg -3'
miRNA:   3'- -CGGgauUgUCGUGUCUCUCgcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 45557 0.67 0.900794
Target:  5'- cGCCCUGGCcuccgcgaggagcucGCGCAGccaGGCGGCCUg -3'
miRNA:   3'- -CGGGAUUGu--------------CGUGUCuc-UCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 45705 0.7 0.790724
Target:  5'- cGCCCgucGCAGUagaGCAGcGGGGCcacGACCCUg -3'
miRNA:   3'- -CGGGau-UGUCG---UGUC-UCUCG---CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 46163 0.76 0.438753
Target:  5'- aGCCCcaggAACuccggguggGGC-CAGAGAGCGGCCCg -3'
miRNA:   3'- -CGGGa---UUG---------UCGuGUCUCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 47575 0.71 0.74095
Target:  5'- cCCCUGACGGCcccGCAGAcGucccggauccacucGGCGGCCgCCa -3'
miRNA:   3'- cGGGAUUGUCG---UGUCU-C--------------UCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 47755 0.83 0.196903
Target:  5'- gGCCCUG--GGgACGGAGAGCGGCCUCu -3'
miRNA:   3'- -CGGGAUugUCgUGUCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 47760 0.71 0.724362
Target:  5'- cGCCCUGGCgAGUACGGccuccAGGGCcgucugaaaGCCCCg -3'
miRNA:   3'- -CGGGAUUG-UCGUGUC-----UCUCGc--------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 48233 0.71 0.73415
Target:  5'- cGCCUgggugAGCGccGCGCGGAGGGC--CCCCg -3'
miRNA:   3'- -CGGGa----UUGU--CGUGUCUCUCGcuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 49182 0.66 0.934147
Target:  5'- uCCCgGAUGGUACGGcGGGUguuGGCCCCc -3'
miRNA:   3'- cGGGaUUGUCGUGUCuCUCG---CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 50887 0.71 0.743851
Target:  5'- uGCCCgGACuGGCGCGG-GuGCGGCCUg -3'
miRNA:   3'- -CGGGaUUG-UCGUGUCuCuCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 51568 0.66 0.929072
Target:  5'- aCCCUG--GGCGCcgccGGGAGgGGCCCg -3'
miRNA:   3'- cGGGAUugUCGUGu---CUCUCgCUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.