miRNA display CGI


Results 41 - 60 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 23615 0.68 0.865533
Target:  5'- aGCCCUGucUAGgGCcgGGAGAgGCaGCCCCg -3'
miRNA:   3'- -CGGGAUu-GUCgUG--UCUCU-CGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 24040 0.69 0.817223
Target:  5'- cCCCUGGCGG---GGuGAcGCGGCCCCg -3'
miRNA:   3'- cGGGAUUGUCgugUCuCU-CGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 25279 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 25328 0.67 0.900159
Target:  5'- cGCCCgggucucuGCuGGCAgAGucuGAGCGAUCCUc -3'
miRNA:   3'- -CGGGau------UG-UCGUgUCu--CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 25768 0.67 0.912428
Target:  5'- aCCCcGGCAGC-Cc--GGGUGGCCCCa -3'
miRNA:   3'- cGGGaUUGUCGuGucuCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 26055 0.66 0.943591
Target:  5'- aCCCcGGCAGCccgGGAGAGCcGCCUUa -3'
miRNA:   3'- cGGGaUUGUCGug-UCUCUCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 26145 0.7 0.790724
Target:  5'- gGCCCggucggaAAgAGCACGGGGgcuuaAGCGGCCUg -3'
miRNA:   3'- -CGGGa------UUgUCGUGUCUC-----UCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 26693 0.68 0.865533
Target:  5'- aGCCCUGucUAGgGCcgGGAGAgGCaGCCCCg -3'
miRNA:   3'- -CGGGAUu-GUCgUG--UCUCU-CGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 28357 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 28406 0.67 0.900159
Target:  5'- cGCCCgggucucuGCuGGCAgAGucuGAGCGAUCCUc -3'
miRNA:   3'- -CGGGau------UG-UCGUgUCu--CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 28846 0.67 0.912428
Target:  5'- aCCCcGGCAGC-Cc--GGGUGGCCCCa -3'
miRNA:   3'- cGGGaUUGUCGuGucuCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 29133 0.66 0.943591
Target:  5'- aCCCcGGCAGCccgGGAGAGCcGCCUUa -3'
miRNA:   3'- cGGGaUUGUCGug-UCUCUCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 30107 0.69 0.817223
Target:  5'- aGCUCgcgaAAUuuGGCACAcAGAGCGcCCCCa -3'
miRNA:   3'- -CGGGa---UUG--UCGUGUcUCUCGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 32901 0.67 0.893678
Target:  5'- uGCUac-ACAGUAUGGAGGGCcuugcACCCCa -3'
miRNA:   3'- -CGGgauUGUCGUGUCUCUCGc----UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 33027 0.66 0.934147
Target:  5'- cCCCUGcCGGCcCGGGGcGgGGCCCg -3'
miRNA:   3'- cGGGAUuGUCGuGUCUCuCgCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 33089 0.68 0.857964
Target:  5'- gGCCCU-GCGGCucugggGCAGccGGGUGGCCgCCg -3'
miRNA:   3'- -CGGGAuUGUCG------UGUCu-CUCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 33134 0.68 0.886971
Target:  5'- gGCCCacccgGAcCGGaccaGCGGAcGAGCGgACCCCc -3'
miRNA:   3'- -CGGGa----UU-GUCg---UGUCU-CUCGC-UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 34157 0.67 0.906409
Target:  5'- aGCCCcGGCgagGGUGgGGGGuGCGcCCCCa -3'
miRNA:   3'- -CGGGaUUG---UCGUgUCUCuCGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 38103 0.72 0.678462
Target:  5'- gGCCCggaGACAGUguACAGAGAGacagcgguaggaacaCGGCCUCu -3'
miRNA:   3'- -CGGGa--UUGUCG--UGUCUCUC---------------GCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 39871 0.68 0.865533
Target:  5'- uGCCCgggGGaggaGGCugAGGcuGAGCGGCCUg -3'
miRNA:   3'- -CGGGa--UUg---UCGugUCU--CUCGCUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.