miRNA display CGI


Results 41 - 60 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 51916 0.74 0.562931
Target:  5'- gGCCUccgaGGCACcGAcGGGCGGCCCCg -3'
miRNA:   3'- -CGGGauugUCGUGuCU-CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 52647 0.7 0.79971
Target:  5'- cGCUCUGGC-GCAU-GAGGGCGuccagccucGCCCCc -3'
miRNA:   3'- -CGGGAUUGuCGUGuCUCUCGC---------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 55253 0.68 0.880042
Target:  5'- cGCCCgGGCGGCcCGGGcGAaGCGGCUCg -3'
miRNA:   3'- -CGGGaUUGUCGuGUCU-CU-CGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 26693 0.68 0.865533
Target:  5'- aGCCCUGucUAGgGCcgGGAGAgGCaGCCCCg -3'
miRNA:   3'- -CGGGAUu-GUCgUG--UCUCU-CGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 45705 0.7 0.790724
Target:  5'- cGCCCgucGCAGUagaGCAGcGGGGCcacGACCCUg -3'
miRNA:   3'- -CGGGau-UGUCG---UGUC-UCUCG---CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 65213 0.72 0.694561
Target:  5'- gGCCCUGGgAGCccgggcgucCAGAG-GUGACCUCg -3'
miRNA:   3'- -CGGGAUUgUCGu--------GUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 114963 0.74 0.533142
Target:  5'- uGCCCUGGaggaGGCAgAGAGGGCGgggaacGCCUCc -3'
miRNA:   3'- -CGGGAUUg---UCGUgUCUCUCGC------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 110183 0.75 0.503935
Target:  5'- gGCCU---CAGCGCcgguuGGAGAuGCGGCCCCa -3'
miRNA:   3'- -CGGGauuGUCGUG-----UCUCU-CGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 48233 0.71 0.73415
Target:  5'- cGCCUgggugAGCGccGCGCGGAGGGC--CCCCg -3'
miRNA:   3'- -CGGGa----UUGU--CGUGUCUCUCGcuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 167864 0.7 0.762953
Target:  5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3'
miRNA:   3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 25279 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 128155 0.71 0.731222
Target:  5'- gGCCCUGcugccgcaggcgauGCAGCGacgccgGGAG-GCGGCCCa -3'
miRNA:   3'- -CGGGAU--------------UGUCGUg-----UCUCuCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 110393 0.73 0.603286
Target:  5'- gGCCCagUGGgAGCACccucgccgucgGGGGAGCuGGCCCCc -3'
miRNA:   3'- -CGGG--AUUgUCGUG-----------UCUCUCG-CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 92696 0.69 0.842227
Target:  5'- aGUCg-GAgGGCAguGAcAGCGACCCCu -3'
miRNA:   3'- -CGGgaUUgUCGUguCUcUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 78806 0.69 0.825734
Target:  5'- cGCCCcccAGCAGCAgcccCAGGccGGGCcGCCCCc -3'
miRNA:   3'- -CGGGa--UUGUCGU----GUCU--CUCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 66802 0.7 0.781597
Target:  5'- gGCCCaGGCGGCGCAuGAG-GCGgaguaacucgcGCCUCa -3'
miRNA:   3'- -CGGGaUUGUCGUGU-CUCuCGC-----------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 20537 0.68 0.865533
Target:  5'- aGCCCUGucUAGgGCcgGGAGAgGCaGCCCCg -3'
miRNA:   3'- -CGGGAUu-GUCgUG--UCUCU-CGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 68062 0.66 0.947963
Target:  5'- aGCUCcacgAGCGGCGC-GAGcaAGCGcagaGCCCCc -3'
miRNA:   3'- -CGGGa---UUGUCGUGuCUC--UCGC----UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 129056 0.68 0.880042
Target:  5'- gGCCCaGACgccGGCGCAGAcAGC--CCCCg -3'
miRNA:   3'- -CGGGaUUG---UCGUGUCUcUCGcuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 14381 0.68 0.865533
Target:  5'- aGCCCUGucUAGgGCcgGGAGAgGCaGCCCCg -3'
miRNA:   3'- -CGGGAUu-GUCgUG--UCUCU-CGcUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.