miRNA display CGI


Results 41 - 60 of 265 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 52971 0.7 0.771404
Target:  5'- gGCCCUccGCGGgGCGGGGcgGGCGucucgagGCCCCu -3'
miRNA:   3'- -CGGGAu-UGUCgUGUCUC--UCGC-------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 56842 0.71 0.721409
Target:  5'- gGCCuCUGGCGGCggggGCGGcAGcuuuggcuggggcuGGCGGCCCCc -3'
miRNA:   3'- -CGG-GAUUGUCG----UGUC-UC--------------UCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 46163 0.76 0.438753
Target:  5'- aGCCCcaggAACuccggguggGGC-CAGAGAGCGGCCCg -3'
miRNA:   3'- -CGGGa---UUG---------UCGuGUCUCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 169728 0.7 0.762953
Target:  5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3'
miRNA:   3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 154924 0.77 0.403736
Target:  5'- cGCCCUucGCAGgCGCAGGGAaCGcCCCCa -3'
miRNA:   3'- -CGGGAu-UGUC-GUGUCUCUcGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 155893 0.68 0.872894
Target:  5'- uCCCUGgcaaACAGgGCAGAGAGaCGggaauggccgcaGCCCUc -3'
miRNA:   3'- cGGGAU----UGUCgUGUCUCUC-GC------------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 110183 0.75 0.503935
Target:  5'- gGCCU---CAGCGCcgguuGGAGAuGCGGCCCCa -3'
miRNA:   3'- -CGGGauuGUCGUG-----UCUCU-CGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 23615 0.68 0.865533
Target:  5'- aGCCCUGucUAGgGCcgGGAGAgGCaGCCCCg -3'
miRNA:   3'- -CGGGAUu-GUCgUG--UCUCU-CGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 14381 0.68 0.865533
Target:  5'- aGCCCUGucUAGgGCcgGGAGAgGCaGCCCCg -3'
miRNA:   3'- -CGGGAUu-GUCgUG--UCUCU-CGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 111024 0.69 0.825734
Target:  5'- gGCCUU--UAGCACGGAGcugaugGGCGACaCCUc -3'
miRNA:   3'- -CGGGAuuGUCGUGUCUC------UCGCUG-GGG- -5'
28737 5' -55.4 NC_006146.1 + 142986 0.69 0.817223
Target:  5'- cGCCCUAGCccuuGGC-CGuGGGAGCaGCuCCCg -3'
miRNA:   3'- -CGGGAUUG----UCGuGU-CUCUCGcUG-GGG- -5'
28737 5' -55.4 NC_006146.1 + 161423 0.7 0.79971
Target:  5'- uGUCCagUGGCugauGC-CAGAGGGCGcggACCCCg -3'
miRNA:   3'- -CGGG--AUUGu---CGuGUCUCUCGC---UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 66802 0.7 0.781597
Target:  5'- gGCCCaGGCGGCGCAuGAG-GCGgaguaacucgcGCCUCa -3'
miRNA:   3'- -CGGGaUUGUCGUGU-CUCuCGC-----------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 28357 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 19123 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 47575 0.71 0.74095
Target:  5'- cCCCUGACGGCcccGCAGAcGucccggauccacucGGCGGCCgCCa -3'
miRNA:   3'- cGGGAUUGUCG---UGUCU-C--------------UCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 128155 0.71 0.731222
Target:  5'- gGCCCUGcugccgcaggcgauGCAGCGacgccgGGAG-GCGGCCCa -3'
miRNA:   3'- -CGGGAU--------------UGUCGUg-----UCUCuCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 38103 0.72 0.678462
Target:  5'- gGCCCggaGACAGUguACAGAGAGacagcgguaggaacaCGGCCUCu -3'
miRNA:   3'- -CGGGa--UUGUCG--UGUCUCUC---------------GCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 128226 0.73 0.613445
Target:  5'- cGCUCUuuCGGCGCGGGGAGCucUUCCg -3'
miRNA:   3'- -CGGGAuuGUCGUGUCUCUCGcuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 129331 0.74 0.572965
Target:  5'- cGUCCUcgcGCAGCGCGcGGAGCGGCCg- -3'
miRNA:   3'- -CGGGAu--UGUCGUGUcUCUCGCUGGgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.