miRNA display CGI


Results 41 - 60 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 148654 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 151731 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 154809 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 157887 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 65213 0.72 0.694561
Target:  5'- gGCCCUGGgAGCccgggcgucCAGAG-GUGACCUCg -3'
miRNA:   3'- -CGGGAUUgUCGu--------GUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 121663 0.72 0.698566
Target:  5'- gGCCCUGGacccggaGGUGCAgGAGGGCaucgaccguauccugGACCCCa -3'
miRNA:   3'- -CGGGAUUg------UCGUGU-CUCUCG---------------CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 56842 0.71 0.721409
Target:  5'- gGCCuCUGGCGGCggggGCGGcAGcuuuggcuggggcuGGCGGCCCCc -3'
miRNA:   3'- -CGG-GAUUGUCG----UGUC-UC--------------UCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 109346 0.71 0.721409
Target:  5'- gGCCCUcgggguggggaauaGACAGC---GAGGGCGuCCCCc -3'
miRNA:   3'- -CGGGA--------------UUGUCGuguCUCUCGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 6250 0.71 0.723378
Target:  5'- gGCCCUAu--GUuucuCAGGGuccgucuGGCGACCCCg -3'
miRNA:   3'- -CGGGAUuguCGu---GUCUC-------UCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 67859 0.71 0.724362
Target:  5'- cUCCUAACGGCGCuGuauGAGaGGCCCUg -3'
miRNA:   3'- cGGGAUUGUCGUGuCu--CUCgCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 41494 0.71 0.724362
Target:  5'- gGCCUUGGgGuGCGCGGGGA-CGACgCCCg -3'
miRNA:   3'- -CGGGAUUgU-CGUGUCUCUcGCUG-GGG- -5'
28737 5' -55.4 NC_006146.1 + 47760 0.71 0.724362
Target:  5'- cGCCCUGGCgAGUACGGccuccAGGGCcgucugaaaGCCCCg -3'
miRNA:   3'- -CGGGAUUG-UCGUGUC-----UCUCGc--------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 128155 0.71 0.731222
Target:  5'- gGCCCUGcugccgcaggcgauGCAGCGacgccgGGAG-GCGGCCCa -3'
miRNA:   3'- -CGGGAU--------------UGUCGUg-----UCUCuCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 48233 0.71 0.73415
Target:  5'- cGCCUgggugAGCGccGCGCGGAGGGC--CCCCg -3'
miRNA:   3'- -CGGGa----UUGU--CGUGUCUCUCGcuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 2036 0.71 0.73415
Target:  5'- aCCCUAGgccuCAGCGCcaAGAGAG-GGCCCg -3'
miRNA:   3'- cGGGAUU----GUCGUG--UCUCUCgCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 47575 0.71 0.74095
Target:  5'- cCCCUGACGGCcccGCAGAcGucccggauccacucGGCGGCCgCCa -3'
miRNA:   3'- cGGGAUUGUCG---UGUCU-C--------------UCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 83746 0.71 0.743851
Target:  5'- cCCCUGugGGCcgugaGCAGuGGGUGGCCUg -3'
miRNA:   3'- cGGGAUugUCG-----UGUCuCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 50887 0.71 0.743851
Target:  5'- uGCCCgGACuGGCGCGG-GuGCGGCCUg -3'
miRNA:   3'- -CGGGaUUG-UCGUGUCuCuCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 14549 0.71 0.743851
Target:  5'- gGCCCUGgaGCuGCugGGccgcuuucGGGGCGugaGCCCCa -3'
miRNA:   3'- -CGGGAU--UGuCGugUC--------UCUCGC---UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 70576 0.71 0.743851
Target:  5'- gGCCCUGaaGCAGCaggugcGCAGGGGGgGAaCCUg -3'
miRNA:   3'- -CGGGAU--UGUCG------UGUCUCUCgCUgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.