miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 15444 0.73 0.613445
Target:  5'- aGUCCUGccuGGCGCAGcAGAGCGAgaCCCUg -3'
miRNA:   3'- -CGGGAUug-UCGUGUC-UCUCGCU--GGGG- -5'
28737 5' -55.4 NC_006146.1 + 146671 0.73 0.613445
Target:  5'- aCCCUccCGG-GCGGuGGGCGGCCCCg -3'
miRNA:   3'- cGGGAuuGUCgUGUCuCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 147167 0.73 0.623618
Target:  5'- aCCCggcGGCGGCGCAGAccGGCG-CCCCu -3'
miRNA:   3'- cGGGa--UUGUCGUGUCUc-UCGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 145223 0.73 0.633797
Target:  5'- gGCCCUG--GGCcCcGAGGGCGGCUCCc -3'
miRNA:   3'- -CGGGAUugUCGuGuCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 151379 0.73 0.633797
Target:  5'- gGCCCUG--GGCcCcGAGGGCGGCUCCc -3'
miRNA:   3'- -CGGGAUugUCGuGuCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 22898 0.73 0.633797
Target:  5'- gGCCCcAACAuGUGCAGGGAa-GGCCCCa -3'
miRNA:   3'- -CGGGaUUGU-CGUGUCUCUcgCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 77991 0.73 0.633797
Target:  5'- gGUCCUcucugucugGACAGCACGGGGGGUgguGGCCUa -3'
miRNA:   3'- -CGGGA---------UUGUCGUGUCUCUCG---CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 154457 0.73 0.633797
Target:  5'- gGCCCUG--GGCcCcGAGGGCGGCUCCc -3'
miRNA:   3'- -CGGGAUugUCGuGuCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 157535 0.73 0.633797
Target:  5'- gGCCCUG--GGCcCcGAGGGCGGCUCCc -3'
miRNA:   3'- -CGGGAUugUCGuGuCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 148301 0.73 0.633797
Target:  5'- gGCCCUG--GGCcCcGAGGGCGGCUCCc -3'
miRNA:   3'- -CGGGAUugUCGuGuCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 142145 0.73 0.633797
Target:  5'- gGCCCUG--GGCcCcGAGGGCGGCUCCc -3'
miRNA:   3'- -CGGGAUugUCGuGuCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 76959 0.72 0.643975
Target:  5'- cGCCU----GGgACGGAGAGCGgaGCCCCg -3'
miRNA:   3'- -CGGGauugUCgUGUCUCUCGC--UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 41894 0.72 0.643975
Target:  5'- cGUUCguguuuCAGCGCAGuAGcGCGACCCCc -3'
miRNA:   3'- -CGGGauu---GUCGUGUC-UCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 138769 0.72 0.660237
Target:  5'- gGCCCUGGCuaaccugcuacguGCugGGAGAGCuucggaugGGCCCg -3'
miRNA:   3'- -CGGGAUUGu------------CGugUCUCUCG--------CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 107975 0.72 0.668349
Target:  5'- gGCCCUggagaccacaGACAGggcaaagacggugcaCGCAGAGAGaaGCCCCa -3'
miRNA:   3'- -CGGGA----------UUGUC---------------GUGUCUCUCgcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 40140 0.72 0.674421
Target:  5'- uGUCCUuGCGGUACAGGGcGGCGucuuCUCCg -3'
miRNA:   3'- -CGGGAuUGUCGUGUCUC-UCGCu---GGGG- -5'
28737 5' -55.4 NC_006146.1 + 38103 0.72 0.678462
Target:  5'- gGCCCggaGACAGUguACAGAGAGacagcgguaggaacaCGGCCUCu -3'
miRNA:   3'- -CGGGa--UUGUCG--UGUCUCUC---------------GCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 157887 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 145576 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 148654 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.