Results 21 - 40 of 265 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 51785 | 0.66 | 0.943141 |
Target: 5'- uGCCCaGAgccgagucCAGcCACuugaucaGGAGGGCGGCCUCc -3' miRNA: 3'- -CGGGaUU--------GUC-GUG-------UCUCUCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 59427 | 0.66 | 0.942234 |
Target: 5'- uCCUUGgugugcacgaaggcGCAGgGCAGGGGGCagGACUCCc -3' miRNA: 3'- cGGGAU--------------UGUCgUGUCUCUCG--CUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 43242 | 0.66 | 0.940857 |
Target: 5'- cCCCUGgaGCAGCAgaUAGcccaccgagaggcacAGGGCGGCCUg -3' miRNA: 3'- cGGGAU--UGUCGU--GUC---------------UCUCGCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 130139 | 0.66 | 0.938986 |
Target: 5'- aCCCUcaGGCGGgACAgGGGAGUGGCuaauauCCCg -3' miRNA: 3'- cGGGA--UUGUCgUGU-CUCUCGCUG------GGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 155580 | 0.66 | 0.938986 |
Target: 5'- cGCCCgccAGgGGCACAccGGGGCuGGCCuCCg -3' miRNA: 3'- -CGGGa--UUgUCGUGUc-UCUCG-CUGG-GG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 149939 | 0.66 | 0.938986 |
Target: 5'- uGCCCUcGgGGUugAG-GGGCG-CCCa -3' miRNA: 3'- -CGGGAuUgUCGugUCuCUCGCuGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 52700 | 0.66 | 0.938986 |
Target: 5'- aGCUCcgGGCgggAGguCAGGGGGCGGCCggCCa -3' miRNA: 3'- -CGGGa-UUG---UCguGUCUCUCGCUGG--GG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 106055 | 0.66 | 0.938986 |
Target: 5'- aGCCCUu-CuGCACcuGAG-GCGGCUCUg -3' miRNA: 3'- -CGGGAuuGuCGUGu-CUCuCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 99907 | 0.66 | 0.938986 |
Target: 5'- uGCCCcccgGGCGCA-AGAGCGgGCUCCg -3' miRNA: 3'- -CGGGauugUCGUGUcUCUCGC-UGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 165959 | 0.66 | 0.938986 |
Target: 5'- cCCCUggUccccggGGCACAGAGcacGGCcACCCg -3' miRNA: 3'- cGGGAuuG------UCGUGUCUC---UCGcUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 71604 | 0.66 | 0.938986 |
Target: 5'- gGCCCUGACcaGGCG-GGAGAuuaACCCCa -3' miRNA: 3'- -CGGGAUUG--UCGUgUCUCUcgcUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 43060 | 0.66 | 0.938986 |
Target: 5'- -gCCUGGCGGUugAGGGgugccAGCGACUg- -3' miRNA: 3'- cgGGAUUGUCGugUCUC-----UCGCUGGgg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 41221 | 0.66 | 0.938986 |
Target: 5'- aUCgaGGCGGCGCugaAGAGAcCGGCCCUg -3' miRNA: 3'- cGGgaUUGUCGUG---UCUCUcGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 78107 | 0.66 | 0.938986 |
Target: 5'- gGCCCUggaaGACAGgGaagccuGAGAGgcagaGGCCCCu -3' miRNA: 3'- -CGGGA----UUGUCgUgu----CUCUCg----CUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 40425 | 0.66 | 0.938986 |
Target: 5'- aGCCacc-CGGgGCGGc-AGCGGCCCCg -3' miRNA: 3'- -CGGgauuGUCgUGUCucUCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 21681 | 0.66 | 0.938986 |
Target: 5'- aCUUUGACAaacuGCuGCAGGGGGCGGCCa- -3' miRNA: 3'- cGGGAUUGU----CG-UGUCUCUCGCUGGgg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 62217 | 0.66 | 0.936111 |
Target: 5'- aGCCCUGcgccGCAGC-CucuGGGCGcagaacuccaucaacGCCCCa -3' miRNA: 3'- -CGGGAU----UGUCGuGucuCUCGC---------------UGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 59576 | 0.66 | 0.934147 |
Target: 5'- gGCC---ACGGCGCagguggcgaucuGGAGGGCGGcgucCCCCg -3' miRNA: 3'- -CGGgauUGUCGUG------------UCUCUCGCU----GGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 49182 | 0.66 | 0.934147 |
Target: 5'- uCCCgGAUGGUACGGcGGGUguuGGCCCCc -3' miRNA: 3'- cGGGaUUGUCGUGUCuCUCG---CUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 75824 | 0.66 | 0.934147 |
Target: 5'- gGCCCUgcggGACAuGCACcaGGGGAGCucugGACCa- -3' miRNA: 3'- -CGGGA----UUGU-CGUG--UCUCUCG----CUGGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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