miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 120129 0.66 0.943141
Target:  5'- uGCCC--ACAcCACcgaGGAGAGCGAggacgaggacggcCCCCu -3'
miRNA:   3'- -CGGGauUGUcGUG---UCUCUCGCU-------------GGGG- -5'
28737 5' -55.4 NC_006146.1 + 59427 0.66 0.942234
Target:  5'- uCCUUGgugugcacgaaggcGCAGgGCAGGGGGCagGACUCCc -3'
miRNA:   3'- cGGGAU--------------UGUCgUGUCUCUCG--CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 43242 0.66 0.940857
Target:  5'- cCCCUGgaGCAGCAgaUAGcccaccgagaggcacAGGGCGGCCUg -3'
miRNA:   3'- cGGGAU--UGUCGU--GUC---------------UCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 149939 0.66 0.938986
Target:  5'- uGCCCUcGgGGUugAG-GGGCG-CCCa -3'
miRNA:   3'- -CGGGAuUgUCGugUCuCUCGCuGGGg -5'
28737 5' -55.4 NC_006146.1 + 106055 0.66 0.938986
Target:  5'- aGCCCUu-CuGCACcuGAG-GCGGCUCUg -3'
miRNA:   3'- -CGGGAuuGuCGUGu-CUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 155580 0.66 0.938986
Target:  5'- cGCCCgccAGgGGCACAccGGGGCuGGCCuCCg -3'
miRNA:   3'- -CGGGa--UUgUCGUGUc-UCUCG-CUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 52700 0.66 0.938986
Target:  5'- aGCUCcgGGCgggAGguCAGGGGGCGGCCggCCa -3'
miRNA:   3'- -CGGGa-UUG---UCguGUCUCUCGCUGG--GG- -5'
28737 5' -55.4 NC_006146.1 + 99907 0.66 0.938986
Target:  5'- uGCCCcccgGGCGCA-AGAGCGgGCUCCg -3'
miRNA:   3'- -CGGGauugUCGUGUcUCUCGC-UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 130139 0.66 0.938986
Target:  5'- aCCCUcaGGCGGgACAgGGGAGUGGCuaauauCCCg -3'
miRNA:   3'- cGGGA--UUGUCgUGU-CUCUCGCUG------GGG- -5'
28737 5' -55.4 NC_006146.1 + 71604 0.66 0.938986
Target:  5'- gGCCCUGACcaGGCG-GGAGAuuaACCCCa -3'
miRNA:   3'- -CGGGAUUG--UCGUgUCUCUcgcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 40425 0.66 0.938986
Target:  5'- aGCCacc-CGGgGCGGc-AGCGGCCCCg -3'
miRNA:   3'- -CGGgauuGUCgUGUCucUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 21681 0.66 0.938986
Target:  5'- aCUUUGACAaacuGCuGCAGGGGGCGGCCa- -3'
miRNA:   3'- cGGGAUUGU----CG-UGUCUCUCGCUGGgg -5'
28737 5' -55.4 NC_006146.1 + 165959 0.66 0.938986
Target:  5'- cCCCUggUccccggGGCACAGAGcacGGCcACCCg -3'
miRNA:   3'- cGGGAuuG------UCGUGUCUC---UCGcUGGGg -5'
28737 5' -55.4 NC_006146.1 + 78107 0.66 0.938986
Target:  5'- gGCCCUggaaGACAGgGaagccuGAGAGgcagaGGCCCCu -3'
miRNA:   3'- -CGGGA----UUGUCgUgu----CUCUCg----CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 41221 0.66 0.938986
Target:  5'- aUCgaGGCGGCGCugaAGAGAcCGGCCCUg -3'
miRNA:   3'- cGGgaUUGUCGUG---UCUCUcGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 43060 0.66 0.938986
Target:  5'- -gCCUGGCGGUugAGGGgugccAGCGACUg- -3'
miRNA:   3'- cgGGAUUGUCGugUCUC-----UCGCUGGgg -5'
28737 5' -55.4 NC_006146.1 + 62217 0.66 0.936111
Target:  5'- aGCCCUGcgccGCAGC-CucuGGGCGcagaacuccaucaacGCCCCa -3'
miRNA:   3'- -CGGGAU----UGUCGuGucuCUCGC---------------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 59576 0.66 0.934147
Target:  5'- gGCC---ACGGCGCagguggcgaucuGGAGGGCGGcgucCCCCg -3'
miRNA:   3'- -CGGgauUGUCGUG------------UCUCUCGCU----GGGG- -5'
28737 5' -55.4 NC_006146.1 + 114721 0.66 0.934147
Target:  5'- gGCCCUGGCGGC-C-GAGuaucGGCGcauCCUCa -3'
miRNA:   3'- -CGGGAUUGUCGuGuCUC----UCGCu--GGGG- -5'
28737 5' -55.4 NC_006146.1 + 49182 0.66 0.934147
Target:  5'- uCCCgGAUGGUACGGcGGGUguuGGCCCCc -3'
miRNA:   3'- cGGGaUUGUCGUGUCuCUCG---CUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.