miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 16534 0.67 0.912428
Target:  5'- aCCCcGGCAGC-Cc--GGGUGGCCCCa -3'
miRNA:   3'- cGGGaUUGUCGuGucuCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 16822 0.66 0.943591
Target:  5'- aCCCcGGCAGCccgGGAGAGCcGCCUUa -3'
miRNA:   3'- cGGGaUUGUCGug-UCUCUCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 17459 0.68 0.865533
Target:  5'- aGCCCUGucUAGgGCcgGGAGAgGCaGCCCCg -3'
miRNA:   3'- -CGGGAUu-GUCgUG--UCUCU-CGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 18383 0.68 0.872894
Target:  5'- gGUCCUggUGGC-CGGGGuGGUGAUCCUa -3'
miRNA:   3'- -CGGGAuuGUCGuGUCUC-UCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 18971 0.74 0.583039
Target:  5'- gGCCCcuagagagGGCGGCAgGGccGGAGCcaGACCCCa -3'
miRNA:   3'- -CGGGa-------UUGUCGUgUC--UCUCG--CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 19123 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 19172 0.67 0.900159
Target:  5'- cGCCCgggucucuGCuGGCAgAGucuGAGCGAUCCUc -3'
miRNA:   3'- -CGGGau------UG-UCGUgUCu--CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 19612 0.67 0.912428
Target:  5'- aCCCcGGCAGC-Cc--GGGUGGCCCCa -3'
miRNA:   3'- cGGGaUUGUCGuGucuCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 19900 0.66 0.943591
Target:  5'- aCCCcGGCAGCccgGGAGAGCcGCCUUa -3'
miRNA:   3'- cGGGaUUGUCGug-UCUCUCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 20407 0.67 0.896947
Target:  5'- uGCCCUccgccuccgacaggGACGGCuacCAGGGGGCcacugucauccaGCCCCu -3'
miRNA:   3'- -CGGGA--------------UUGUCGu--GUCUCUCGc-----------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 20537 0.68 0.865533
Target:  5'- aGCCCUGucUAGgGCcgGGAGAgGCaGCCCCg -3'
miRNA:   3'- -CGGGAUu-GUCgUG--UCUCU-CGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 21073 0.66 0.934147
Target:  5'- gGCCCUGGCcGCccacaccaccCGGAGccuguuuGUGGCCCCc -3'
miRNA:   3'- -CGGGAUUGuCGu---------GUCUCu------CGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 21681 0.66 0.938986
Target:  5'- aCUUUGACAaacuGCuGCAGGGGGCGGCCa- -3'
miRNA:   3'- cGGGAUUGU----CG-UGUCUCUCGCUGGgg -5'
28737 5' -55.4 NC_006146.1 + 22201 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 22250 0.67 0.900159
Target:  5'- cGCCCgggucucuGCuGGCAgAGucuGAGCGAUCCUc -3'
miRNA:   3'- -CGGGau------UG-UCGUgUCu--CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 22690 0.67 0.912428
Target:  5'- aCCCcGGCAGC-Cc--GGGUGGCCCCa -3'
miRNA:   3'- cGGGaUUGUCGuGucuCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 22762 0.68 0.880042
Target:  5'- gGCCCUGAcCAGCACGaAGcccauGCGgcACUCCa -3'
miRNA:   3'- -CGGGAUU-GUCGUGUcUCu----CGC--UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 22898 0.73 0.633797
Target:  5'- gGCCCcAACAuGUGCAGGGAa-GGCCCCa -3'
miRNA:   3'- -CGGGaUUGU-CGUGUCUCUcgCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 22977 0.66 0.943591
Target:  5'- aCCCcGGCAGCccgGGAGAGCcGCCUUa -3'
miRNA:   3'- cGGGaUUGUCGug-UCUCUCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 23146 0.7 0.772337
Target:  5'- aGCCUgGGCuucgcuuGCACAGAGucgcucGCGGCCCg -3'
miRNA:   3'- -CGGGaUUGu------CGUGUCUCu-----CGCUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.