miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 157535 0.73 0.633797
Target:  5'- gGCCCUG--GGCcCcGAGGGCGGCUCCc -3'
miRNA:   3'- -CGGGAUugUCGuGuCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 157078 0.74 0.583039
Target:  5'- uGUCCgc-CAGCACcGAGaAGCGGCCCa -3'
miRNA:   3'- -CGGGauuGUCGUGuCUC-UCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 157005 0.66 0.92376
Target:  5'- cGCCCUuGCcuggaGGCAgAGAcuGGGCGGCUgCg -3'
miRNA:   3'- -CGGGAuUG-----UCGUgUCU--CUCGCUGGgG- -5'
28737 5' -55.4 NC_006146.1 + 156257 0.66 0.943591
Target:  5'- uGCCgUGguuggGCAGCACcauGAGCucCCCCa -3'
miRNA:   3'- -CGGgAU-----UGUCGUGucuCUCGcuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 155941 0.67 0.906409
Target:  5'- aGCCggcgaUGACGGU--GGAG-GUGGCCCCg -3'
miRNA:   3'- -CGGg----AUUGUCGugUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 155893 0.68 0.872894
Target:  5'- uCCCUGgcaaACAGgGCAGAGAGaCGggaauggccgcaGCCCUc -3'
miRNA:   3'- cGGGAU----UGUCgUGUCUCUC-GC------------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 155802 0.66 0.93113
Target:  5'- gGCCCUGGgGGcCACcGAGucaaacaggugagucAGCGgaGCCCCc -3'
miRNA:   3'- -CGGGAUUgUC-GUGuCUC---------------UCGC--UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 155580 0.66 0.938986
Target:  5'- cGCCCgccAGgGGCACAccGGGGCuGGCCuCCg -3'
miRNA:   3'- -CGGGa--UUgUCGUGUc-UCUCG-CUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 155450 0.67 0.911243
Target:  5'- aGCCCgugacucuggagGACGGggaCGCGGAGGGCcugaGGCCCa -3'
miRNA:   3'- -CGGGa-----------UUGUC---GUGUCUCUCG----CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 154924 0.77 0.403736
Target:  5'- cGCCCUucGCAGgCGCAGGGAaCGcCCCCa -3'
miRNA:   3'- -CGGGAu-UGUC-GUGUCUCUcGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 154809 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 154741 0.66 0.934147
Target:  5'- aCCCUGgggucugucuGgGGgACuGAGGGCGGCCgCCu -3'
miRNA:   3'- cGGGAU----------UgUCgUGuCUCUCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 154457 0.73 0.633797
Target:  5'- gGCCCUG--GGCcCcGAGGGCGGCUCCc -3'
miRNA:   3'- -CGGGAUugUCGuGuCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 153927 0.66 0.92376
Target:  5'- cGCCCUuGCcuggaGGCAgAGAcuGGGCGGCUgCg -3'
miRNA:   3'- -CGGGAuUG-----UCGUgUCU--CUCGCUGGgG- -5'
28737 5' -55.4 NC_006146.1 + 153328 0.68 0.875061
Target:  5'- cGCCCagcauccgauugaucUGGCGGCGCAGGGAGUcauaggcaaauugGAUCUg -3'
miRNA:   3'- -CGGG---------------AUUGUCGUGUCUCUCG-------------CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 152863 0.67 0.906409
Target:  5'- aGCCggcgaUGACGGU--GGAG-GUGGCCCCg -3'
miRNA:   3'- -CGGg----AUUGUCGugUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 152411 0.7 0.753455
Target:  5'- gGCCCUGGCccauGGCAUguuGAcGAGCGAgcucgucgauCCCCg -3'
miRNA:   3'- -CGGGAUUG----UCGUGu--CU-CUCGCU----------GGGG- -5'
28737 5' -55.4 NC_006146.1 + 152372 0.67 0.911243
Target:  5'- aGCCCgugacucuggagGACGGggaCGCGGAGGGCcugaGGCCCa -3'
miRNA:   3'- -CGGGa-----------UUGUC---GUGUCUCUCG----CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 151731 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 151667 0.66 0.947536
Target:  5'- uGCCCUGAgGGCGuuGAGgacGGCaaacucacguccaGGCCCUg -3'
miRNA:   3'- -CGGGAUUgUCGUguCUC---UCG-------------CUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.