miRNA display CGI


Results 41 - 60 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 151379 0.73 0.633797
Target:  5'- gGCCCUG--GGCcCcGAGGGCGGCUCCc -3'
miRNA:   3'- -CGGGAUugUCGuGuCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 150849 0.66 0.92376
Target:  5'- cGCCCUuGCcuggaGGCAgAGAcuGGGCGGCUgCg -3'
miRNA:   3'- -CGGGAuUG-----UCGUgUCU--CUCGCUGGgG- -5'
28737 5' -55.4 NC_006146.1 + 149939 0.66 0.938986
Target:  5'- uGCCCUcGgGGUugAG-GGGCG-CCCa -3'
miRNA:   3'- -CGGGAuUgUCGugUCuCUCGCuGGGg -5'
28737 5' -55.4 NC_006146.1 + 149785 0.67 0.906409
Target:  5'- aGCCggcgaUGACGGU--GGAG-GUGGCCCCg -3'
miRNA:   3'- -CGGg----AUUGUCGugUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 149294 0.67 0.911243
Target:  5'- aGCCCgugacucuggagGACGGggaCGCGGAGGGCcugaGGCCCa -3'
miRNA:   3'- -CGGGa-----------UUGUC---GUGUCUCUCG----CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 148654 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 148586 0.66 0.934147
Target:  5'- aCCCUGgggucugucuGgGGgACuGAGGGCGGCCgCCu -3'
miRNA:   3'- cGGGAU----------UgUCgUGuCUCUCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 148301 0.73 0.633797
Target:  5'- gGCCCUG--GGCcCcGAGGGCGGCUCCc -3'
miRNA:   3'- -CGGGAUugUCGuGuCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 148301 0.68 0.872894
Target:  5'- aGCUCcAGCaggAGCGCGGAGAGCcaGACgUCCa -3'
miRNA:   3'- -CGGGaUUG---UCGUGUCUCUCG--CUG-GGG- -5'
28737 5' -55.4 NC_006146.1 + 147771 0.66 0.92376
Target:  5'- cGCCCUuGCcuggaGGCAgAGAcuGGGCGGCUgCg -3'
miRNA:   3'- -CGGGAuUG-----UCGUgUCU--CUCGCUGGgG- -5'
28737 5' -55.4 NC_006146.1 + 147167 0.73 0.623618
Target:  5'- aCCCggcGGCGGCGCAGAccGGCG-CCCCu -3'
miRNA:   3'- cGGGa--UUGUCGUGUCUc-UCGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 146707 0.67 0.906409
Target:  5'- aGCCggcgaUGACGGU--GGAG-GUGGCCCCg -3'
miRNA:   3'- -CGGg----AUUGUCGugUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 146671 0.73 0.613445
Target:  5'- aCCCUccCGG-GCGGuGGGCGGCCCCg -3'
miRNA:   3'- cGGGAuuGUCgUGUCuCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 146216 0.67 0.911243
Target:  5'- aGCCCgugacucuggagGACGGggaCGCGGAGGGCcugaGGCCCa -3'
miRNA:   3'- -CGGGa-----------UUGUC---GUGUCUCUCG----CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 145576 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 145508 0.66 0.934147
Target:  5'- aCCCUGgggucugucuGgGGgACuGAGGGCGGCCgCCu -3'
miRNA:   3'- cGGGAU----------UgUCgUGuCUCUCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 145223 0.73 0.633797
Target:  5'- gGCCCUG--GGCcCcGAGGGCGGCUCCc -3'
miRNA:   3'- -CGGGAUugUCGuGuCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 143630 0.67 0.906409
Target:  5'- aGCCggcgaUGACGGU--GGAG-GUGGCCCCg -3'
miRNA:   3'- -CGGg----AUUGUCGugUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 143138 0.67 0.911243
Target:  5'- aGCCCgugacucuggagGACGGggaCGCGGAGGGCcugaGGCCCa -3'
miRNA:   3'- -CGGGa-----------UUGUC---GUGUCUCUCG----CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 142986 0.69 0.817223
Target:  5'- cGCCCUAGCccuuGGC-CGuGGGAGCaGCuCCCg -3'
miRNA:   3'- -CGGGAUUG----UCGuGU-CUCUCGcUG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.