miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 47575 0.71 0.74095
Target:  5'- cCCCUGACGGCcccGCAGAcGucccggauccacucGGCGGCCgCCa -3'
miRNA:   3'- cGGGAUUGUCG---UGUCU-C--------------UCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 128155 0.71 0.731222
Target:  5'- gGCCCUGcugccgcaggcgauGCAGCGacgccgGGAG-GCGGCCCa -3'
miRNA:   3'- -CGGGAU--------------UGUCGUg-----UCUCuCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 146671 0.73 0.613445
Target:  5'- aCCCUccCGG-GCGGuGGGCGGCCCCg -3'
miRNA:   3'- cGGGAuuGUCgUGUCuCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 128543 0.75 0.503935
Target:  5'- aCCCUGGCGGCGCGGgagauccuGGAGCGgcaguucgcgGCCUCg -3'
miRNA:   3'- cGGGAUUGUCGUGUC--------UCUCGC----------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 54116 0.7 0.781597
Target:  5'- cGCCCUugagcgucuGCAGguCcguGGAGuaguAGCGGCCCCc -3'
miRNA:   3'- -CGGGAu--------UGUCguG---UCUC----UCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 22201 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 56842 0.71 0.721409
Target:  5'- gGCCuCUGGCGGCggggGCGGcAGcuuuggcuggggcuGGCGGCCCCc -3'
miRNA:   3'- -CGG-GAUUGUCG----UGUC-UC--------------UCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 46163 0.76 0.438753
Target:  5'- aGCCCcaggAACuccggguggGGC-CAGAGAGCGGCCCg -3'
miRNA:   3'- -CGGGa---UUG---------UCGuGUCUCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 19123 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 154924 0.77 0.403736
Target:  5'- cGCCCUucGCAGgCGCAGGGAaCGcCCCCa -3'
miRNA:   3'- -CGGGAu-UGUC-GUGUCUCUcGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 47760 0.71 0.724362
Target:  5'- cGCCCUGGCgAGUACGGccuccAGGGCcgucugaaaGCCCCg -3'
miRNA:   3'- -CGGGAUUG-UCGUGUC-----UCUCGc--------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 70576 0.71 0.743851
Target:  5'- gGCCCUGaaGCAGCaggugcGCAGGGGGgGAaCCUg -3'
miRNA:   3'- -CGGGAU--UGUCG------UGUCUCUCgCUgGGG- -5'
28737 5' -55.4 NC_006146.1 + 38103 0.72 0.678462
Target:  5'- gGCCCggaGACAGUguACAGAGAGacagcgguaggaacaCGGCCUCu -3'
miRNA:   3'- -CGGGa--UUGUCG--UGUCUCUC---------------GCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 128226 0.73 0.613445
Target:  5'- cGCUCUuuCGGCGCGGGGAGCucUUCCg -3'
miRNA:   3'- -CGGGAuuGUCGUGUCUCUCGcuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 129331 0.74 0.572965
Target:  5'- cGUCCUcgcGCAGCGCGcGGAGCGGCCg- -3'
miRNA:   3'- -CGGGAu--UGUCGUGUcUCUCGCUGGgg -5'
28737 5' -55.4 NC_006146.1 + 110183 0.75 0.503935
Target:  5'- gGCCU---CAGCGCcgguuGGAGAuGCGGCCCCa -3'
miRNA:   3'- -CGGGauuGUCGUG-----UCUCU-CGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 161423 0.7 0.79971
Target:  5'- uGUCCagUGGCugauGC-CAGAGGGCGcggACCCCg -3'
miRNA:   3'- -CGGG--AUUGu---CGuGUCUCUCGC---UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 66802 0.7 0.781597
Target:  5'- gGCCCaGGCGGCGCAuGAG-GCGgaguaacucgcGCCUCa -3'
miRNA:   3'- -CGGGaUUGUCGUGU-CUCuCGC-----------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 168796 0.7 0.762953
Target:  5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3'
miRNA:   3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 25279 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.