Results 21 - 40 of 265 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 47575 | 0.71 | 0.74095 |
Target: 5'- cCCCUGACGGCcccGCAGAcGucccggauccacucGGCGGCCgCCa -3' miRNA: 3'- cGGGAUUGUCG---UGUCU-C--------------UCGCUGG-GG- -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 128155 | 0.71 | 0.731222 |
Target: 5'- gGCCCUGcugccgcaggcgauGCAGCGacgccgGGAG-GCGGCCCa -3' miRNA: 3'- -CGGGAU--------------UGUCGUg-----UCUCuCGCUGGGg -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 146671 | 0.73 | 0.613445 |
Target: 5'- aCCCUccCGG-GCGGuGGGCGGCCCCg -3' miRNA: 3'- cGGGAuuGUCgUGUCuCUCGCUGGGG- -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 128543 | 0.75 | 0.503935 |
Target: 5'- aCCCUGGCGGCGCGGgagauccuGGAGCGgcaguucgcgGCCUCg -3' miRNA: 3'- cGGGAUUGUCGUGUC--------UCUCGC----------UGGGG- -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 54116 | 0.7 | 0.781597 |
Target: 5'- cGCCCUugagcgucuGCAGguCcguGGAGuaguAGCGGCCCCc -3' miRNA: 3'- -CGGGAu--------UGUCguG---UCUC----UCGCUGGGG- -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 22201 | 0.7 | 0.762953 |
Target: 5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3' miRNA: 3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 56842 | 0.71 | 0.721409 |
Target: 5'- gGCCuCUGGCGGCggggGCGGcAGcuuuggcuggggcuGGCGGCCCCc -3' miRNA: 3'- -CGG-GAUUGUCG----UGUC-UC--------------UCGCUGGGG- -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 46163 | 0.76 | 0.438753 |
Target: 5'- aGCCCcaggAACuccggguggGGC-CAGAGAGCGGCCCg -3' miRNA: 3'- -CGGGa---UUG---------UCGuGUCUCUCGCUGGGg -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 19123 | 0.7 | 0.762953 |
Target: 5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3' miRNA: 3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 154924 | 0.77 | 0.403736 |
Target: 5'- cGCCCUucGCAGgCGCAGGGAaCGcCCCCa -3' miRNA: 3'- -CGGGAu-UGUC-GUGUCUCUcGCuGGGG- -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 47760 | 0.71 | 0.724362 |
Target: 5'- cGCCCUGGCgAGUACGGccuccAGGGCcgucugaaaGCCCCg -3' miRNA: 3'- -CGGGAUUG-UCGUGUC-----UCUCGc--------UGGGG- -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 70576 | 0.71 | 0.743851 |
Target: 5'- gGCCCUGaaGCAGCaggugcGCAGGGGGgGAaCCUg -3' miRNA: 3'- -CGGGAU--UGUCG------UGUCUCUCgCUgGGG- -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 38103 | 0.72 | 0.678462 |
Target: 5'- gGCCCggaGACAGUguACAGAGAGacagcgguaggaacaCGGCCUCu -3' miRNA: 3'- -CGGGa--UUGUCG--UGUCUCUC---------------GCUGGGG- -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 128226 | 0.73 | 0.613445 |
Target: 5'- cGCUCUuuCGGCGCGGGGAGCucUUCCg -3' miRNA: 3'- -CGGGAuuGUCGUGUCUCUCGcuGGGG- -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 129331 | 0.74 | 0.572965 |
Target: 5'- cGUCCUcgcGCAGCGCGcGGAGCGGCCg- -3' miRNA: 3'- -CGGGAu--UGUCGUGUcUCUCGCUGGgg -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 110183 | 0.75 | 0.503935 |
Target: 5'- gGCCU---CAGCGCcgguuGGAGAuGCGGCCCCa -3' miRNA: 3'- -CGGGauuGUCGUG-----UCUCU-CGCUGGGG- -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 161423 | 0.7 | 0.79971 |
Target: 5'- uGUCCagUGGCugauGC-CAGAGGGCGcggACCCCg -3' miRNA: 3'- -CGGG--AUUGu---CGuGUCUCUCGC---UGGGG- -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 66802 | 0.7 | 0.781597 |
Target: 5'- gGCCCaGGCGGCGCAuGAG-GCGgaguaacucgcGCCUCa -3' miRNA: 3'- -CGGGaUUGUCGUGU-CUCuCGC-----------UGGGG- -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 168796 | 0.7 | 0.762953 |
Target: 5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3' miRNA: 3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5' |
|||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 25279 | 0.7 | 0.762953 |
Target: 5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3' miRNA: 3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home