miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 2116 0.8 0.289237
Target:  5'- cGCCU---CGGCACGGAGAGCG-CCCUa -3'
miRNA:   3'- -CGGGauuGUCGUGUCUCUCGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 167864 0.7 0.762953
Target:  5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3'
miRNA:   3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 28357 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 2036 0.71 0.73415
Target:  5'- aCCCUAGgccuCAGCGCcaAGAGAG-GGCCCg -3'
miRNA:   3'- cGGGAUU----GUCGUG--UCUCUCgCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 147167 0.73 0.623618
Target:  5'- aCCCggcGGCGGCGCAGAccGGCG-CCCCu -3'
miRNA:   3'- cGGGa--UUGUCGUGUCUc-UCGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 68884 0.7 0.781597
Target:  5'- gGCCCUGAUGGagAUGGAGAagGUGGCCaCCg -3'
miRNA:   3'- -CGGGAUUGUCg-UGUCUCU--CGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 169728 0.7 0.762953
Target:  5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3'
miRNA:   3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 157078 0.74 0.583039
Target:  5'- uGUCCgc-CAGCACcGAGaAGCGGCCCa -3'
miRNA:   3'- -CGGGauuGUCGUGuCUC-UCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 152411 0.7 0.753455
Target:  5'- gGCCCUGGCccauGGCAUguuGAcGAGCGAgcucgucgauCCCCg -3'
miRNA:   3'- -CGGGAUUG----UCGUGu--CU-CUCGCU----------GGGG- -5'
28737 5' -55.4 NC_006146.1 + 47575 0.71 0.74095
Target:  5'- cCCCUGACGGCcccGCAGAcGucccggauccacucGGCGGCCgCCa -3'
miRNA:   3'- cGGGAUUGUCG---UGUCU-C--------------UCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 51916 0.74 0.562931
Target:  5'- gGCCUccgaGGCACcGAcGGGCGGCCCCg -3'
miRNA:   3'- -CGGGauugUCGUGuCU-CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 114963 0.74 0.533142
Target:  5'- uGCCCUGGaggaGGCAgAGAGGGCGgggaacGCCUCc -3'
miRNA:   3'- -CGGGAUUg---UCGUgUCUCUCGC------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 52647 0.7 0.79971
Target:  5'- cGCUCUGGC-GCAU-GAGGGCGuccagccucGCCCCc -3'
miRNA:   3'- -CGGGAUUGuCGUGuCUCUCGC---------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 45705 0.7 0.790724
Target:  5'- cGCCCgucGCAGUagaGCAGcGGGGCcacGACCCUg -3'
miRNA:   3'- -CGGGau-UGUCG---UGUC-UCUCG---CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 25279 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 65213 0.72 0.694561
Target:  5'- gGCCCUGGgAGCccgggcgucCAGAG-GUGACCUCg -3'
miRNA:   3'- -CGGGAUUgUCGu--------GUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 41894 0.72 0.643975
Target:  5'- cGUUCguguuuCAGCGCAGuAGcGCGACCCCc -3'
miRNA:   3'- -CGGGauu---GUCGUGUC-UCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 110183 0.75 0.503935
Target:  5'- gGCCU---CAGCGCcgguuGGAGAuGCGGCCCCa -3'
miRNA:   3'- -CGGGauuGUCGUG-----UCUCU-CGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 48233 0.71 0.73415
Target:  5'- cGCCUgggugAGCGccGCGCGGAGGGC--CCCCg -3'
miRNA:   3'- -CGGGa----UUGU--CGUGUCUCUCGcuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 16045 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.