Results 21 - 40 of 265 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 2116 | 0.8 | 0.289237 |
Target: 5'- cGCCU---CGGCACGGAGAGCG-CCCUa -3' miRNA: 3'- -CGGGauuGUCGUGUCUCUCGCuGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 167864 | 0.7 | 0.762953 |
Target: 5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3' miRNA: 3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 28357 | 0.7 | 0.762953 |
Target: 5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3' miRNA: 3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 2036 | 0.71 | 0.73415 |
Target: 5'- aCCCUAGgccuCAGCGCcaAGAGAG-GGCCCg -3' miRNA: 3'- cGGGAUU----GUCGUG--UCUCUCgCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 147167 | 0.73 | 0.623618 |
Target: 5'- aCCCggcGGCGGCGCAGAccGGCG-CCCCu -3' miRNA: 3'- cGGGa--UUGUCGUGUCUc-UCGCuGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 68884 | 0.7 | 0.781597 |
Target: 5'- gGCCCUGAUGGagAUGGAGAagGUGGCCaCCg -3' miRNA: 3'- -CGGGAUUGUCg-UGUCUCU--CGCUGG-GG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 169728 | 0.7 | 0.762953 |
Target: 5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3' miRNA: 3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 157078 | 0.74 | 0.583039 |
Target: 5'- uGUCCgc-CAGCACcGAGaAGCGGCCCa -3' miRNA: 3'- -CGGGauuGUCGUGuCUC-UCGCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 152411 | 0.7 | 0.753455 |
Target: 5'- gGCCCUGGCccauGGCAUguuGAcGAGCGAgcucgucgauCCCCg -3' miRNA: 3'- -CGGGAUUG----UCGUGu--CU-CUCGCU----------GGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 47575 | 0.71 | 0.74095 |
Target: 5'- cCCCUGACGGCcccGCAGAcGucccggauccacucGGCGGCCgCCa -3' miRNA: 3'- cGGGAUUGUCG---UGUCU-C--------------UCGCUGG-GG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 51916 | 0.74 | 0.562931 |
Target: 5'- gGCCUccgaGGCACcGAcGGGCGGCCCCg -3' miRNA: 3'- -CGGGauugUCGUGuCU-CUCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 114963 | 0.74 | 0.533142 |
Target: 5'- uGCCCUGGaggaGGCAgAGAGGGCGgggaacGCCUCc -3' miRNA: 3'- -CGGGAUUg---UCGUgUCUCUCGC------UGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 52647 | 0.7 | 0.79971 |
Target: 5'- cGCUCUGGC-GCAU-GAGGGCGuccagccucGCCCCc -3' miRNA: 3'- -CGGGAUUGuCGUGuCUCUCGC---------UGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 45705 | 0.7 | 0.790724 |
Target: 5'- cGCCCgucGCAGUagaGCAGcGGGGCcacGACCCUg -3' miRNA: 3'- -CGGGau-UGUCG---UGUC-UCUCG---CUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 25279 | 0.7 | 0.762953 |
Target: 5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3' miRNA: 3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 65213 | 0.72 | 0.694561 |
Target: 5'- gGCCCUGGgAGCccgggcgucCAGAG-GUGACCUCg -3' miRNA: 3'- -CGGGAUUgUCGu--------GUCUCuCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 41894 | 0.72 | 0.643975 |
Target: 5'- cGUUCguguuuCAGCGCAGuAGcGCGACCCCc -3' miRNA: 3'- -CGGGauu---GUCGUGUC-UCuCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 110183 | 0.75 | 0.503935 |
Target: 5'- gGCCU---CAGCGCcgguuGGAGAuGCGGCCCCa -3' miRNA: 3'- -CGGGauuGUCGUG-----UCUCU-CGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 48233 | 0.71 | 0.73415 |
Target: 5'- cGCCUgggugAGCGccGCGCGGAGGGC--CCCCg -3' miRNA: 3'- -CGGGa----UUGU--CGUGUCUCUCGcuGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 16045 | 0.7 | 0.762953 |
Target: 5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3' miRNA: 3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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