Results 1 - 20 of 265 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 2116 | 0.8 | 0.289237 |
Target: 5'- cGCCU---CGGCACGGAGAGCG-CCCUa -3' miRNA: 3'- -CGGGauuGUCGUGUCUCUCGCuGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 56842 | 0.71 | 0.721409 |
Target: 5'- gGCCuCUGGCGGCggggGCGGcAGcuuuggcuggggcuGGCGGCCCCc -3' miRNA: 3'- -CGG-GAUUGUCG----UGUC-UC--------------UCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 128155 | 0.71 | 0.731222 |
Target: 5'- gGCCCUGcugccgcaggcgauGCAGCGacgccgGGAG-GCGGCCCa -3' miRNA: 3'- -CGGGAU--------------UGUCGUg-----UCUCuCGCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 68062 | 0.66 | 0.947963 |
Target: 5'- aGCUCcacgAGCGGCGC-GAGcaAGCGcagaGCCCCc -3' miRNA: 3'- -CGGGa---UUGUCGUGuCUC--UCGC----UGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 110183 | 0.75 | 0.503935 |
Target: 5'- gGCCU---CAGCGCcgguuGGAGAuGCGGCCCCa -3' miRNA: 3'- -CGGGauuGUCGUG-----UCUCU-CGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 114963 | 0.74 | 0.533142 |
Target: 5'- uGCCCUGGaggaGGCAgAGAGGGCGgggaacGCCUCc -3' miRNA: 3'- -CGGGAUUg---UCGUgUCUCUCGC------UGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 129331 | 0.74 | 0.572965 |
Target: 5'- cGUCCUcgcGCAGCGCGcGGAGCGGCCg- -3' miRNA: 3'- -CGGGAu--UGUCGUGUcUCUCGCUGGgg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 157078 | 0.74 | 0.583039 |
Target: 5'- uGUCCgc-CAGCACcGAGaAGCGGCCCa -3' miRNA: 3'- -CGGGauuGUCGUGuCUC-UCGCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 128226 | 0.73 | 0.613445 |
Target: 5'- cGCUCUuuCGGCGCGGGGAGCucUUCCg -3' miRNA: 3'- -CGGGAuuGUCGUGUCUCUCGcuGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 109346 | 0.71 | 0.721409 |
Target: 5'- gGCCCUcgggguggggaauaGACAGC---GAGGGCGuCCCCc -3' miRNA: 3'- -CGGGA--------------UUGUCGuguCUCUCGCuGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 41894 | 0.72 | 0.643975 |
Target: 5'- cGUUCguguuuCAGCGCAGuAGcGCGACCCCc -3' miRNA: 3'- -CGGGauu---GUCGUGUC-UCuCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 146671 | 0.73 | 0.613445 |
Target: 5'- aCCCUccCGG-GCGGuGGGCGGCCCCg -3' miRNA: 3'- cGGGAuuGUCgUGUCuCUCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 154924 | 0.77 | 0.403736 |
Target: 5'- cGCCCUucGCAGgCGCAGGGAaCGcCCCCa -3' miRNA: 3'- -CGGGAu-UGUC-GUGUCUCUcGCuGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 38103 | 0.72 | 0.678462 |
Target: 5'- gGCCCggaGACAGUguACAGAGAGacagcgguaggaacaCGGCCUCu -3' miRNA: 3'- -CGGGa--UUGUCG--UGUCUCUC---------------GCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 46163 | 0.76 | 0.438753 |
Target: 5'- aGCCCcaggAACuccggguggGGC-CAGAGAGCGGCCCg -3' miRNA: 3'- -CGGGa---UUG---------UCGuGUCUCUCGCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 110393 | 0.73 | 0.603286 |
Target: 5'- gGCCCagUGGgAGCACccucgccgucgGGGGAGCuGGCCCCc -3' miRNA: 3'- -CGGG--AUUgUCGUG-----------UCUCUCG-CUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 65213 | 0.72 | 0.694561 |
Target: 5'- gGCCCUGGgAGCccgggcgucCAGAG-GUGACCUCg -3' miRNA: 3'- -CGGGAUUgUCGu--------GUCUCuCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 47760 | 0.71 | 0.724362 |
Target: 5'- cGCCCUGGCgAGUACGGccuccAGGGCcgucugaaaGCCCCg -3' miRNA: 3'- -CGGGAUUG-UCGUGUC-----UCUCGc--------UGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 128543 | 0.75 | 0.503935 |
Target: 5'- aCCCUGGCGGCGCGGgagauccuGGAGCGgcaguucgcgGCCUCg -3' miRNA: 3'- cGGGAUUGUCGUGUC--------UCUCGC----------UGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 51916 | 0.74 | 0.562931 |
Target: 5'- gGCCUccgaGGCACcGAcGGGCGGCCCCg -3' miRNA: 3'- -CGGGauugUCGUGuCU-CUCGCUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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