miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 68062 0.66 0.947963
Target:  5'- aGCUCcacgAGCGGCGC-GAGcaAGCGcagaGCCCCc -3'
miRNA:   3'- -CGGGa---UUGUCGUGuCUC--UCGC----UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 41221 0.66 0.938986
Target:  5'- aUCgaGGCGGCGCugaAGAGAcCGGCCCUg -3'
miRNA:   3'- cGGgaUUGUCGUG---UCUCUcGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 78107 0.66 0.938986
Target:  5'- gGCCCUggaaGACAGgGaagccuGAGAGgcagaGGCCCCu -3'
miRNA:   3'- -CGGGA----UUGUCgUgu----CUCUCg----CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 40425 0.66 0.938986
Target:  5'- aGCCacc-CGGgGCGGc-AGCGGCCCCg -3'
miRNA:   3'- -CGGgauuGUCgUGUCucUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 21681 0.66 0.938986
Target:  5'- aCUUUGACAaacuGCuGCAGGGGGCGGCCa- -3'
miRNA:   3'- cGGGAUUGU----CG-UGUCUCUCGCUGGgg -5'
28737 5' -55.4 NC_006146.1 + 33027 0.66 0.934147
Target:  5'- cCCCUGcCGGCcCGGGGcGgGGCCCg -3'
miRNA:   3'- cGGGAUuGUCGuGUCUCuCgCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 21073 0.66 0.934147
Target:  5'- gGCCCUGGCcGCccacaccaccCGGAGccuguuuGUGGCCCCc -3'
miRNA:   3'- -CGGGAUUGuCGu---------GUCUCu------CGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 157819 0.66 0.934147
Target:  5'- aCCCUGgggucugucuGgGGgACuGAGGGCGGCCgCCu -3'
miRNA:   3'- cGGGAU----------UgUCgUGuCUCUCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 154741 0.66 0.934147
Target:  5'- aCCCUGgggucugucuGgGGgACuGAGGGCGGCCgCCu -3'
miRNA:   3'- cGGGAU----------UgUCgUGuCUCUCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 43060 0.66 0.938986
Target:  5'- -gCCUGGCGGUugAGGGgugccAGCGACUg- -3'
miRNA:   3'- cgGGAUUGUCGugUCUC-----UCGCUGGgg -5'
28737 5' -55.4 NC_006146.1 + 71604 0.66 0.938986
Target:  5'- gGCCCUGACcaGGCG-GGAGAuuaACCCCa -3'
miRNA:   3'- -CGGGAUUG--UCGUgUCUCUcgcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 165959 0.66 0.938986
Target:  5'- cCCCUggUccccggGGCACAGAGcacGGCcACCCg -3'
miRNA:   3'- cGGGAuuG------UCGUGUCUC---UCGcUGGGg -5'
28737 5' -55.4 NC_006146.1 + 9929 0.66 0.947963
Target:  5'- aGCCCgcgAGCAGgaGCAGcuGAGCGAaaagCCUg -3'
miRNA:   3'- -CGGGa--UUGUCg-UGUCu-CUCGCUg---GGG- -5'
28737 5' -55.4 NC_006146.1 + 115389 0.66 0.947536
Target:  5'- gGCCCUGGCcGCucgcgugcaggagGCAGcuGGCGGCCg- -3'
miRNA:   3'- -CGGGAUUGuCG-------------UGUCucUCGCUGGgg -5'
28737 5' -55.4 NC_006146.1 + 123802 0.66 0.945368
Target:  5'- gGCCUUcuacgaGACGGCGCAGcccaccgucuucgucAG-GCGcCCCCu -3'
miRNA:   3'- -CGGGA------UUGUCGUGUC---------------UCuCGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 117902 0.66 0.943591
Target:  5'- gGCCC--AgGGC-CAGaAGAGgGGCCUCg -3'
miRNA:   3'- -CGGGauUgUCGuGUC-UCUCgCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 111396 0.66 0.943591
Target:  5'- uCCCUcACGauGCGCucAGAGAgGCGGgCCCa -3'
miRNA:   3'- cGGGAuUGU--CGUG--UCUCU-CGCUgGGG- -5'
28737 5' -55.4 NC_006146.1 + 51785 0.66 0.943141
Target:  5'- uGCCCaGAgccgagucCAGcCACuugaucaGGAGGGCGGCCUCc -3'
miRNA:   3'- -CGGGaUU--------GUC-GUG-------UCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 59427 0.66 0.942234
Target:  5'- uCCUUGgugugcacgaaggcGCAGgGCAGGGGGCagGACUCCc -3'
miRNA:   3'- cGGGAU--------------UGUCgUGUCUCUCG--CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 43242 0.66 0.940857
Target:  5'- cCCCUGgaGCAGCAgaUAGcccaccgagaggcacAGGGCGGCCUg -3'
miRNA:   3'- cGGGAU--UGUCGU--GUC---------------UCUCGCUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.