Results 1 - 20 of 265 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 2036 | 0.71 | 0.73415 |
Target: 5'- aCCCUAGgccuCAGCGCcaAGAGAG-GGCCCg -3' miRNA: 3'- cGGGAUU----GUCGUG--UCUCUCgCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 2116 | 0.8 | 0.289237 |
Target: 5'- cGCCU---CGGCACGGAGAGCG-CCCUa -3' miRNA: 3'- -CGGGauuGUCGUGUCUCUCGCuGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 3167 | 0.66 | 0.947963 |
Target: 5'- cGCCCUGAUcgAGCACcu---GCGAUCUCu -3' miRNA: 3'- -CGGGAUUG--UCGUGucucuCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 3746 | 0.69 | 0.817223 |
Target: 5'- gGCCCUu-CAGCcCGGGGuGgGuCCCCu -3' miRNA: 3'- -CGGGAuuGUCGuGUCUCuCgCuGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 4507 | 0.66 | 0.929072 |
Target: 5'- gGCaCUGGCGGgccaGCGGGGGGUGACCa- -3' miRNA: 3'- -CGgGAUUGUCg---UGUCUCUCGCUGGgg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 6250 | 0.71 | 0.723378 |
Target: 5'- gGCCCUAu--GUuucuCAGGGuccgucuGGCGACCCCg -3' miRNA: 3'- -CGGGAUuguCGu---GUCUC-------UCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 6590 | 0.7 | 0.781597 |
Target: 5'- cCCCgacAACAGCaACGGc-AGUGGCCCCg -3' miRNA: 3'- cGGGa--UUGUCG-UGUCucUCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 9929 | 0.66 | 0.947963 |
Target: 5'- aGCCCgcgAGCAGgaGCAGcuGAGCGAaaagCCUg -3' miRNA: 3'- -CGGGa--UUGUCg-UGUCu-CUCGCUg---GGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 12021 | 0.67 | 0.900159 |
Target: 5'- uGCCCgagaccGGCAGCuACGuggcGGGuGCGGCCaCCa -3' miRNA: 3'- -CGGGa-----UUGUCG-UGU----CUCuCGCUGG-GG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 12150 | 0.69 | 0.824891 |
Target: 5'- uGUCCUcGCAGCGgAGAGAccccuacGUGAUCUCg -3' miRNA: 3'- -CGGGAuUGUCGUgUCUCU-------CGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 12957 | 0.67 | 0.918212 |
Target: 5'- gGCCUUGGggUAGCucuggaguCAGAGAGuCGGCCUa -3' miRNA: 3'- -CGGGAUU--GUCGu-------GUCUCUC-GCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 13016 | 0.67 | 0.900159 |
Target: 5'- cGCCCgggucucuGCuGGCAgAGucuGAGCGAUCCUc -3' miRNA: 3'- -CGGGau------UG-UCGUgUCu--CUCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 13456 | 0.67 | 0.912428 |
Target: 5'- aCCCcGGCAGC-Cc--GGGUGGCCCCa -3' miRNA: 3'- cGGGaUUGUCGuGucuCUCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 13744 | 0.66 | 0.943591 |
Target: 5'- aCCCcGGCAGCccgGGAGAGCcGCCUUa -3' miRNA: 3'- cGGGaUUGUCGug-UCUCUCGcUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 14381 | 0.68 | 0.865533 |
Target: 5'- aGCCCUGucUAGgGCcgGGAGAgGCaGCCCCg -3' miRNA: 3'- -CGGGAUu-GUCgUG--UCUCU-CGcUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 14549 | 0.71 | 0.743851 |
Target: 5'- gGCCCUGgaGCuGCugGGccgcuuucGGGGCGugaGCCCCa -3' miRNA: 3'- -CGGGAU--UGuCGugUC--------UCUCGC---UGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 15016 | 0.7 | 0.781597 |
Target: 5'- uGCCCUGuuuGC-CAGGGAGgGGCgCCu -3' miRNA: 3'- -CGGGAUuguCGuGUCUCUCgCUGgGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 15444 | 0.73 | 0.613445 |
Target: 5'- aGUCCUGccuGGCGCAGcAGAGCGAgaCCCUg -3' miRNA: 3'- -CGGGAUug-UCGUGUC-UCUCGCU--GGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 16045 | 0.7 | 0.762953 |
Target: 5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3' miRNA: 3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 16094 | 0.67 | 0.900159 |
Target: 5'- cGCCCgggucucuGCuGGCAgAGucuGAGCGAUCCUc -3' miRNA: 3'- -CGGGau------UG-UCGUgUCu--CUCGCUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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