miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 2036 0.71 0.73415
Target:  5'- aCCCUAGgccuCAGCGCcaAGAGAG-GGCCCg -3'
miRNA:   3'- cGGGAUU----GUCGUG--UCUCUCgCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 2116 0.8 0.289237
Target:  5'- cGCCU---CGGCACGGAGAGCG-CCCUa -3'
miRNA:   3'- -CGGGauuGUCGUGUCUCUCGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 3167 0.66 0.947963
Target:  5'- cGCCCUGAUcgAGCACcu---GCGAUCUCu -3'
miRNA:   3'- -CGGGAUUG--UCGUGucucuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 3746 0.69 0.817223
Target:  5'- gGCCCUu-CAGCcCGGGGuGgGuCCCCu -3'
miRNA:   3'- -CGGGAuuGUCGuGUCUCuCgCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 4507 0.66 0.929072
Target:  5'- gGCaCUGGCGGgccaGCGGGGGGUGACCa- -3'
miRNA:   3'- -CGgGAUUGUCg---UGUCUCUCGCUGGgg -5'
28737 5' -55.4 NC_006146.1 + 6250 0.71 0.723378
Target:  5'- gGCCCUAu--GUuucuCAGGGuccgucuGGCGACCCCg -3'
miRNA:   3'- -CGGGAUuguCGu---GUCUC-------UCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 6590 0.7 0.781597
Target:  5'- cCCCgacAACAGCaACGGc-AGUGGCCCCg -3'
miRNA:   3'- cGGGa--UUGUCG-UGUCucUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 9929 0.66 0.947963
Target:  5'- aGCCCgcgAGCAGgaGCAGcuGAGCGAaaagCCUg -3'
miRNA:   3'- -CGGGa--UUGUCg-UGUCu-CUCGCUg---GGG- -5'
28737 5' -55.4 NC_006146.1 + 12021 0.67 0.900159
Target:  5'- uGCCCgagaccGGCAGCuACGuggcGGGuGCGGCCaCCa -3'
miRNA:   3'- -CGGGa-----UUGUCG-UGU----CUCuCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 12150 0.69 0.824891
Target:  5'- uGUCCUcGCAGCGgAGAGAccccuacGUGAUCUCg -3'
miRNA:   3'- -CGGGAuUGUCGUgUCUCU-------CGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 12957 0.67 0.918212
Target:  5'- gGCCUUGGggUAGCucuggaguCAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUU--GUCGu-------GUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 13016 0.67 0.900159
Target:  5'- cGCCCgggucucuGCuGGCAgAGucuGAGCGAUCCUc -3'
miRNA:   3'- -CGGGau------UG-UCGUgUCu--CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 13456 0.67 0.912428
Target:  5'- aCCCcGGCAGC-Cc--GGGUGGCCCCa -3'
miRNA:   3'- cGGGaUUGUCGuGucuCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 13744 0.66 0.943591
Target:  5'- aCCCcGGCAGCccgGGAGAGCcGCCUUa -3'
miRNA:   3'- cGGGaUUGUCGug-UCUCUCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 14381 0.68 0.865533
Target:  5'- aGCCCUGucUAGgGCcgGGAGAgGCaGCCCCg -3'
miRNA:   3'- -CGGGAUu-GUCgUG--UCUCU-CGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 14549 0.71 0.743851
Target:  5'- gGCCCUGgaGCuGCugGGccgcuuucGGGGCGugaGCCCCa -3'
miRNA:   3'- -CGGGAU--UGuCGugUC--------UCUCGC---UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 15016 0.7 0.781597
Target:  5'- uGCCCUGuuuGC-CAGGGAGgGGCgCCu -3'
miRNA:   3'- -CGGGAUuguCGuGUCUCUCgCUGgGG- -5'
28737 5' -55.4 NC_006146.1 + 15444 0.73 0.613445
Target:  5'- aGUCCUGccuGGCGCAGcAGAGCGAgaCCCUg -3'
miRNA:   3'- -CGGGAUug-UCGUGUC-UCUCGCU--GGGG- -5'
28737 5' -55.4 NC_006146.1 + 16045 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 16094 0.67 0.900159
Target:  5'- cGCCCgggucucuGCuGGCAgAGucuGAGCGAUCCUc -3'
miRNA:   3'- -CGGGau------UG-UCGUgUCu--CUCGCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.