miRNA display CGI


Results 61 - 80 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 152411 0.7 0.753455
Target:  5'- gGCCCUGGCccauGGCAUguuGAcGAGCGAgcucgucgauCCCCg -3'
miRNA:   3'- -CGGGAUUG----UCGUGu--CU-CUCGCU----------GGGG- -5'
28737 5' -55.4 NC_006146.1 + 67944 0.7 0.753455
Target:  5'- uCCCggaugGGCGGCugcccuCGGAGGGCGACUaCCu -3'
miRNA:   3'- cGGGa----UUGUCGu-----GUCUCUCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 72202 0.7 0.753455
Target:  5'- gGCCggAugGGCG-GGAGAccaGCGGCCCCa -3'
miRNA:   3'- -CGGgaUugUCGUgUCUCU---CGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 19123 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 16045 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 92063 0.7 0.762953
Target:  5'- gGCCCggccuggGGCuGCuGCuGGGGGGCGGCCCg -3'
miRNA:   3'- -CGGGa------UUGuCG-UG-UCUCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 22201 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 167864 0.7 0.762953
Target:  5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3'
miRNA:   3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 115998 0.7 0.762953
Target:  5'- uCCCUGAaggcCGGC-CAGAcggcgcGAGCGgACCCCg -3'
miRNA:   3'- cGGGAUU----GUCGuGUCU------CUCGC-UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 168796 0.7 0.762953
Target:  5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3'
miRNA:   3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 28357 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 25279 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 169728 0.7 0.762953
Target:  5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3'
miRNA:   3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 52971 0.7 0.771404
Target:  5'- gGCCCUccGCGGgGCGGGGcgGGCGucucgagGCCCCu -3'
miRNA:   3'- -CGGGAu-UGUCgUGUCUC--UCGC-------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 23146 0.7 0.772337
Target:  5'- aGCCUgGGCuucgcuuGCACAGAGucgcucGCGGCCCg -3'
miRNA:   3'- -CGGGaUUGu------CGUGUCUCu-----CGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 57294 0.7 0.772337
Target:  5'- cGCCggGGCAgGCgACGGAGAgacugGCGACCCg -3'
miRNA:   3'- -CGGgaUUGU-CG-UGUCUCU-----CGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 101585 0.7 0.772337
Target:  5'- aGUCCccACAGCgACGcGAGAGUacugGGCCCCa -3'
miRNA:   3'- -CGGGauUGUCG-UGU-CUCUCG----CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 6590 0.7 0.781597
Target:  5'- cCCCgacAACAGCaACGGc-AGUGGCCCCg -3'
miRNA:   3'- cGGGa--UUGUCG-UGUCucUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 117028 0.7 0.781597
Target:  5'- cGCCCUAACgggGGCGCuGAGGGCcagcgucGCCUa -3'
miRNA:   3'- -CGGGAUUG---UCGUGuCUCUCGc------UGGGg -5'
28737 5' -55.4 NC_006146.1 + 15016 0.7 0.781597
Target:  5'- uGCCCUGuuuGC-CAGGGAGgGGCgCCu -3'
miRNA:   3'- -CGGGAUuguCGuGUCUCUCgCUGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.