miRNA display CGI


Results 61 - 80 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 40822 0.66 0.932649
Target:  5'- gGCCUUGGCcaugagcuugguaaGGgGCAGGGGGCGcucuuggagGCCCg -3'
miRNA:   3'- -CGGGAUUG--------------UCgUGUCUCUCGC---------UGGGg -5'
28737 5' -55.4 NC_006146.1 + 57102 0.66 0.93113
Target:  5'- cGUCCUGGcCAGCGgGGAGAggguggaaGUguuuuacaagucuccGACCCCg -3'
miRNA:   3'- -CGGGAUU-GUCGUgUCUCU--------CG---------------CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 115718 0.66 0.929072
Target:  5'- cGCCCgccGCGGcCGCAGccugGGAcGCGgucACCCCc -3'
miRNA:   3'- -CGGGau-UGUC-GUGUC----UCU-CGC---UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 154741 0.66 0.934147
Target:  5'- aCCCUGgggucugucuGgGGgACuGAGGGCGGCCgCCu -3'
miRNA:   3'- cGGGAU----------UgUCgUGuCUCUCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 157819 0.66 0.934147
Target:  5'- aCCCUGgggucugucuGgGGgACuGAGGGCGGCCgCCu -3'
miRNA:   3'- cGGGAU----------UgUCgUGuCUCUCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 51568 0.66 0.929072
Target:  5'- aCCCUG--GGCGCcgccGGGAGgGGCCCg -3'
miRNA:   3'- cGGGAUugUCGUGu---CUCUCgCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 123289 0.66 0.92376
Target:  5'- gGCCCUAuCGGCGaucccuGGCGGCCgCCg -3'
miRNA:   3'- -CGGGAUuGUCGUgucuc-UCGCUGG-GG- -5'
28737 5' -55.4 NC_006146.1 + 157005 0.66 0.92376
Target:  5'- cGCCCUuGCcuggaGGCAgAGAcuGGGCGGCUgCg -3'
miRNA:   3'- -CGGGAuUG-----UCGUgUCU--CUCGCUGGgG- -5'
28737 5' -55.4 NC_006146.1 + 153927 0.66 0.92376
Target:  5'- cGCCCUuGCcuggaGGCAgAGAcuGGGCGGCUgCg -3'
miRNA:   3'- -CGGGAuUG-----UCGUgUCU--CUCGCUGGgG- -5'
28737 5' -55.4 NC_006146.1 + 49182 0.66 0.934147
Target:  5'- uCCCgGAUGGUACGGcGGGUguuGGCCCCc -3'
miRNA:   3'- cGGGaUUGUCGUGUCuCUCG---CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 143630 0.67 0.906409
Target:  5'- aGCCggcgaUGACGGU--GGAG-GUGGCCCCg -3'
miRNA:   3'- -CGGg----AUUGUCGugUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 146216 0.67 0.911243
Target:  5'- aGCCCgugacucuggagGACGGggaCGCGGAGGGCcugaGGCCCa -3'
miRNA:   3'- -CGGGa-----------UUGUC---GUGUCUCUCG----CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 155941 0.67 0.906409
Target:  5'- aGCCggcgaUGACGGU--GGAG-GUGGCCCCg -3'
miRNA:   3'- -CGGg----AUUGUCGugUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 152863 0.67 0.906409
Target:  5'- aGCCggcgaUGACGGU--GGAG-GUGGCCCCg -3'
miRNA:   3'- -CGGg----AUUGUCGugUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 149785 0.67 0.906409
Target:  5'- aGCCggcgaUGACGGU--GGAG-GUGGCCCCg -3'
miRNA:   3'- -CGGg----AUUGUCGugUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 146707 0.67 0.906409
Target:  5'- aGCCggcgaUGACGGU--GGAG-GUGGCCCCg -3'
miRNA:   3'- -CGGg----AUUGUCGugUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 70854 0.67 0.906409
Target:  5'- aGCCCUcuuccCGGCGCAGgugguuugucAGGGCugcuCCCCg -3'
miRNA:   3'- -CGGGAuu---GUCGUGUC----------UCUCGcu--GGGG- -5'
28737 5' -55.4 NC_006146.1 + 59778 0.67 0.900159
Target:  5'- -aCCUGGgGGUugAGGGuGuCGACCCg -3'
miRNA:   3'- cgGGAUUgUCGugUCUCuC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 84275 0.67 0.900159
Target:  5'- gGCCCc--CAGCaACAGGGuGaUGAUCCCu -3'
miRNA:   3'- -CGGGauuGUCG-UGUCUCuC-GCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 143138 0.67 0.911243
Target:  5'- aGCCCgugacucuggagGACGGggaCGCGGAGGGCcugaGGCCCa -3'
miRNA:   3'- -CGGGa-----------UUGUC---GUGUCUCUCG----CUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.