miRNA display CGI


Results 61 - 80 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 66802 0.7 0.781597
Target:  5'- gGCCCaGGCGGCGCAuGAG-GCGgaguaacucgcGCCUCa -3'
miRNA:   3'- -CGGGaUUGUCGUGU-CUCuCGC-----------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 54798 0.69 0.808546
Target:  5'- cGCCUUGgGCAGCucguUGGAGAG-GACCCg -3'
miRNA:   3'- -CGGGAU-UGUCGu---GUCUCUCgCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 114963 0.74 0.533142
Target:  5'- uGCCCUGGaggaGGCAgAGAGGGCGgggaacGCCUCc -3'
miRNA:   3'- -CGGGAUUg---UCGUgUCUCUCGC------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 157078 0.74 0.583039
Target:  5'- uGUCCgc-CAGCACcGAGaAGCGGCCCa -3'
miRNA:   3'- -CGGGauuGUCGUGuCUC-UCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 147167 0.73 0.623618
Target:  5'- aCCCggcGGCGGCGCAGAccGGCG-CCCCu -3'
miRNA:   3'- cGGGa--UUGUCGUGUCUc-UCGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 65213 0.72 0.694561
Target:  5'- gGCCCUGGgAGCccgggcgucCAGAG-GUGACCUCg -3'
miRNA:   3'- -CGGGAUUgUCGu--------GUCUCuCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 2036 0.71 0.73415
Target:  5'- aCCCUAGgccuCAGCGCcaAGAGAG-GGCCCg -3'
miRNA:   3'- cGGGAUU----GUCGUG--UCUCUCgCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 70576 0.71 0.743851
Target:  5'- gGCCCUGaaGCAGCaggugcGCAGGGGGgGAaCCUg -3'
miRNA:   3'- -CGGGAU--UGUCG------UGUCUCUCgCUgGGG- -5'
28737 5' -55.4 NC_006146.1 + 22201 0.7 0.762953
Target:  5'- aGCUCUGGgAGU-CAGAGAGuCGGCCUa -3'
miRNA:   3'- -CGGGAUUgUCGuGUCUCUC-GCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 167864 0.7 0.762953
Target:  5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3'
miRNA:   3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 87458 0.67 0.906409
Target:  5'- gGCCCUGucccuGCAGUACuacGAGGGC-AUCUCu -3'
miRNA:   3'- -CGGGAU-----UGUCGUGu--CUCUCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 128497 0.67 0.900159
Target:  5'- cGCCUUcgagGACGGCGuCGGgguggcccuGGGGCG-CCCCu -3'
miRNA:   3'- -CGGGA----UUGUCGU-GUC---------UCUCGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 78806 0.69 0.825734
Target:  5'- cGCCCcccAGCAGCAgcccCAGGccGGGCcGCCCCc -3'
miRNA:   3'- -CGGGa--UUGUCGU----GUCU--CUCGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 137989 0.68 0.850193
Target:  5'- gGCCC-GGCGGggUGGGGGGUGcGCCCCc -3'
miRNA:   3'- -CGGGaUUGUCguGUCUCUCGC-UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 23615 0.68 0.865533
Target:  5'- aGCCCUGucUAGgGCcgGGAGAgGCaGCCCCg -3'
miRNA:   3'- -CGGGAUu-GUCgUG--UCUCU-CGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 155893 0.68 0.872894
Target:  5'- uCCCUGgcaaACAGgGCAGAGAGaCGggaauggccgcaGCCCUc -3'
miRNA:   3'- cGGGAU----UGUCgUGUCUCUC-GC------------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 167684 0.68 0.880042
Target:  5'- aCCCgAGgGGCgaGCGGGGGGCuuCCCCg -3'
miRNA:   3'- cGGGaUUgUCG--UGUCUCUCGcuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 170480 0.68 0.880042
Target:  5'- aCCCgAGgGGCgaGCGGGGGGCuuCCCCg -3'
miRNA:   3'- cGGGaUUgUCG--UGUCUCUCGcuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 16094 0.67 0.900159
Target:  5'- cGCCCgggucucuGCuGGCAgAGucuGAGCGAUCCUc -3'
miRNA:   3'- -CGGGau------UG-UCGUgUCu--CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 25328 0.67 0.900159
Target:  5'- cGCCCgggucucuGCuGGCAgAGucuGAGCGAUCCUc -3'
miRNA:   3'- -CGGGau------UG-UCGUgUCu--CUCGCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.