Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28738 | 5' | -57 | NC_006146.1 | + | 44770 | 0.66 | 0.891112 |
Target: 5'- gGCCCGGCgGGCGGggaacccagGCcggggAUCUg -3' miRNA: 3'- aCGGGCCGgCCGUCauaca----CGa----UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 43930 | 0.73 | 0.5154 |
Target: 5'- cGCCCGGCagucgGGCGGg--GU-CUAUCCa -3' miRNA: 3'- aCGGGCCGg----CCGUCauaCAcGAUAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 42716 | 0.67 | 0.828661 |
Target: 5'- cGCCCgcucgGGCUGGCAGccgcggauccgggcgGUGCUG-CCg -3' miRNA: 3'- aCGGG-----CCGGCCGUCaua------------CACGAUaGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 41353 | 0.66 | 0.88708 |
Target: 5'- gGCCCagGGCCuGGCGGUgGUGgccgugGCUcuGUCUc -3' miRNA: 3'- aCGGG--CCGG-CCGUCA-UACa-----CGA--UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 39836 | 0.67 | 0.849702 |
Target: 5'- gGCCUcggccgcacagugGGCCGGCGGgggcUGUGUGC---CCg -3' miRNA: 3'- aCGGG-------------CCGGCCGUC----AUACACGauaGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 34256 | 0.69 | 0.725311 |
Target: 5'- cGCCgGGCCGGCuGgggguUGUGCaccccCCg -3' miRNA: 3'- aCGGgCCGGCCGuCau---ACACGaua--GG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 33899 | 0.68 | 0.773039 |
Target: 5'- gUGCCCGGCCuacccccguccuGGagcuccuccgucCGGUggGUGCgGUCCg -3' miRNA: 3'- -ACGGGCCGG------------CC------------GUCAuaCACGaUAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 33542 | 0.66 | 0.865747 |
Target: 5'- gUGCCCGGCUugccuGGCccug-GUGCUccUCCg -3' miRNA: 3'- -ACGGGCCGG-----CCGucauaCACGAu-AGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 29232 | 0.66 | 0.880184 |
Target: 5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3' miRNA: 3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 26154 | 0.66 | 0.880184 |
Target: 5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3' miRNA: 3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 23076 | 0.66 | 0.880184 |
Target: 5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3' miRNA: 3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 19998 | 0.66 | 0.880184 |
Target: 5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3' miRNA: 3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 18666 | 0.71 | 0.625033 |
Target: 5'- aUGCCCGGCCuucGCAGgcgacGCUAUCa -3' miRNA: 3'- -ACGGGCCGGc--CGUCauacaCGAUAGg -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 16921 | 0.66 | 0.880184 |
Target: 5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3' miRNA: 3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 13843 | 0.66 | 0.880184 |
Target: 5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3' miRNA: 3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 12020 | 0.68 | 0.782251 |
Target: 5'- gUGCCCGaGaCCGGCAgcuacGUGgcggGUGCgg-CCa -3' miRNA: 3'- -ACGGGC-C-GGCCGU-----CAUa---CACGauaGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 9306 | 0.74 | 0.431823 |
Target: 5'- cUG-CCGGCCgGGCAGcAUuUGCUAUCCg -3' miRNA: 3'- -ACgGGCCGG-CCGUCaUAcACGAUAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 8950 | 0.73 | 0.52511 |
Target: 5'- uUGCCCGaaagggaaGCCGGgucuccCAGg--GUGCUAUCCa -3' miRNA: 3'- -ACGGGC--------CGGCC------GUCauaCACGAUAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 5270 | 0.69 | 0.713521 |
Target: 5'- cGCCCGaGCCGGgGGUAgaaauuaaUGUCCa -3' miRNA: 3'- aCGGGC-CGGCCgUCAUacacg---AUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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