miRNA display CGI


Results 41 - 59 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28738 5' -57 NC_006146.1 + 151202 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 154280 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 157358 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 64026 0.66 0.88708
Target:  5'- aGgCgGGCCGGCuuGUGcuUGUaCUGUCCc -3'
miRNA:   3'- aCgGgCCGGCCGu-CAU--ACAcGAUAGG- -5'
28738 5' -57 NC_006146.1 + 121355 0.67 0.826155
Target:  5'- gGCCUGGCCGGC---GUG-GCc-UCCg -3'
miRNA:   3'- aCGGGCCGGCCGucaUACaCGauAGG- -5'
28738 5' -57 NC_006146.1 + 59899 0.67 0.825316
Target:  5'- gGCCCcguccagaaagaGGuuGGUGGUcgcucggAUGuUGCUAUCCa -3'
miRNA:   3'- aCGGG------------CCggCCGUCA-------UAC-ACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 161607 1.12 0.00151
Target:  5'- cUGCCCGGCCGGCAGUAUGUGCUAUCCa -3'
miRNA:   3'- -ACGGGCCGGCCGUCAUACACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 43930 0.73 0.5154
Target:  5'- cGCCCGGCagucgGGCGGg--GU-CUAUCCa -3'
miRNA:   3'- aCGGGCCGg----CCGUCauaCAcGAUAGG- -5'
28738 5' -57 NC_006146.1 + 8950 0.73 0.52511
Target:  5'- uUGCCCGaaagggaaGCCGGgucuccCAGg--GUGCUAUCCa -3'
miRNA:   3'- -ACGGGC--------CGGCC------GUCauaCACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 18666 0.71 0.625033
Target:  5'- aUGCCCGGCCuucGCAGgcgacGCUAUCa -3'
miRNA:   3'- -ACGGGCCGGc--CGUCauacaCGAUAGg -5'
28738 5' -57 NC_006146.1 + 140694 0.72 0.545716
Target:  5'- aGCCCGGCgGGCGcagcggcccucUGCUGUCCu -3'
miRNA:   3'- aCGGGCCGgCCGUcauac------ACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 92332 0.7 0.695657
Target:  5'- gGCCCGGCCuggGGCAGcugaUAUGgggcgGCUcgCa -3'
miRNA:   3'- aCGGGCCGG---CCGUC----AUACa----CGAuaGg -5'
28738 5' -57 NC_006146.1 + 50886 0.69 0.725311
Target:  5'- gUGCCCGGaCUGGCGcGg--GUGCgg-CCu -3'
miRNA:   3'- -ACGGGCC-GGCCGU-CauaCACGauaGG- -5'
28738 5' -57 NC_006146.1 + 103687 0.69 0.758049
Target:  5'- gUGCCUGGCCGGCcaggcgaccggccacGGccaGUGgaAUCCc -3'
miRNA:   3'- -ACGGGCCGGCCG---------------UCauaCACgaUAGG- -5'
28738 5' -57 NC_006146.1 + 12020 0.68 0.782251
Target:  5'- gUGCCCGaGaCCGGCAgcuacGUGgcggGUGCgg-CCa -3'
miRNA:   3'- -ACGGGC-C-GGCCGU-----CAUa---CACGauaGG- -5'
28738 5' -57 NC_006146.1 + 127596 0.68 0.782251
Target:  5'- cGCgCCGGCCGGguGagaGUGaCUAaCCu -3'
miRNA:   3'- aCG-GGCCGGCCguCauaCAC-GAUaGG- -5'
28738 5' -57 NC_006146.1 + 89120 0.67 0.817688
Target:  5'- aGCCCGGUgGGauuGGUAUuGUGCc-UCCc -3'
miRNA:   3'- aCGGGCCGgCCg--UCAUA-CACGauAGG- -5'
28738 5' -57 NC_006146.1 + 132624 0.67 0.817688
Target:  5'- ----gGGCCGGCAGUGUG-GCccgcUCCa -3'
miRNA:   3'- acgggCCGGCCGUCAUACaCGau--AGG- -5'
28738 5' -57 NC_006146.1 + 54037 0.66 0.88708
Target:  5'- cGCCUGGCCGGgcCGG-AUGUGgUGg-- -3'
miRNA:   3'- aCGGGCCGGCC--GUCaUACACgAUagg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.