miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28738 5' -57 NC_006146.1 + 26154 0.66 0.880184
Target:  5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3'
miRNA:   3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5'
28738 5' -57 NC_006146.1 + 13843 0.66 0.880184
Target:  5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3'
miRNA:   3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5'
28738 5' -57 NC_006146.1 + 45913 0.67 0.850485
Target:  5'- cGCCCGGCCGGUgacc-GUGCcGUa- -3'
miRNA:   3'- aCGGGCCGGCCGucauaCACGaUAgg -5'
28738 5' -57 NC_006146.1 + 44770 0.66 0.891112
Target:  5'- gGCCCGGCgGGCGGggaacccagGCcggggAUCUg -3'
miRNA:   3'- aCGGGCCGgCCGUCauaca----CGa----UAGG- -5'
28738 5' -57 NC_006146.1 + 23076 0.66 0.880184
Target:  5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3'
miRNA:   3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5'
28738 5' -57 NC_006146.1 + 106674 0.67 0.84256
Target:  5'- cGcCCCGGCCcaggcGCAG-AUGUGCc-UCCu -3'
miRNA:   3'- aC-GGGCCGGc----CGUCaUACACGauAGG- -5'
28738 5' -57 NC_006146.1 + 41353 0.66 0.88708
Target:  5'- gGCCCagGGCCuGGCGGUgGUGgccgugGCUcuGUCUc -3'
miRNA:   3'- aCGGG--CCGG-CCGUCA-UACa-----CGA--UAGG- -5'
28738 5' -57 NC_006146.1 + 112101 0.67 0.834448
Target:  5'- uUGCuuGGCuCGGgGGUGgaggugGUGCUGgugguggCCu -3'
miRNA:   3'- -ACGggCCG-GCCgUCAUa-----CACGAUa------GG- -5'
28738 5' -57 NC_006146.1 + 58151 0.66 0.880184
Target:  5'- cGCCUGGCCGGCuuc---UGCg--CCu -3'
miRNA:   3'- aCGGGCCGGCCGucauacACGauaGG- -5'
28738 5' -57 NC_006146.1 + 42716 0.67 0.828661
Target:  5'- cGCCCgcucgGGCUGGCAGccgcggauccgggcgGUGCUG-CCg -3'
miRNA:   3'- aCGGG-----CCGGCCGUCaua------------CACGAUaGG- -5'
28738 5' -57 NC_006146.1 + 16921 0.66 0.880184
Target:  5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3'
miRNA:   3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5'
28738 5' -57 NC_006146.1 + 137595 0.66 0.865747
Target:  5'- aGCUCgGGCCGGgGGccggGUGCcccuggGUCCg -3'
miRNA:   3'- aCGGG-CCGGCCgUCaua-CACGa-----UAGG- -5'
28738 5' -57 NC_006146.1 + 33542 0.66 0.865747
Target:  5'- gUGCCCGGCUugccuGGCccug-GUGCUccUCCg -3'
miRNA:   3'- -ACGGGCCGG-----CCGucauaCACGAu-AGG- -5'
28738 5' -57 NC_006146.1 + 8950 0.73 0.52511
Target:  5'- uUGCCCGaaagggaaGCCGGgucuccCAGg--GUGCUAUCCa -3'
miRNA:   3'- -ACGGGC--------CGGCC------GUCauaCACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 43930 0.73 0.5154
Target:  5'- cGCCCGGCagucgGGCGGg--GU-CUAUCCa -3'
miRNA:   3'- aCGGGCCGg----CCGUCauaCAcGAUAGG- -5'
28738 5' -57 NC_006146.1 + 145046 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 161607 1.12 0.00151
Target:  5'- cUGCCCGGCCGGCAGUAUGUGCUAUCCa -3'
miRNA:   3'- -ACGGGCCGGCCGUCAUACACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 132624 0.67 0.817688
Target:  5'- ----gGGCCGGCAGUGUG-GCccgcUCCa -3'
miRNA:   3'- acgggCCGGCCGUCAUACaCGau--AGG- -5'
28738 5' -57 NC_006146.1 + 59899 0.67 0.825316
Target:  5'- gGCCCcguccagaaagaGGuuGGUGGUcgcucggAUGuUGCUAUCCa -3'
miRNA:   3'- aCGGG------------CCggCCGUCA-------UAC-ACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 121355 0.67 0.826155
Target:  5'- gGCCUGGCCGGC---GUG-GCc-UCCg -3'
miRNA:   3'- aCGGGCCGGCCGucaUACaCGauAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.