miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28738 5' -57 NC_006146.1 + 50734 0.73 0.5154
Target:  5'- gGCCCGGUCGG-GGUAcGUG-UGUCCg -3'
miRNA:   3'- aCGGGCCGGCCgUCAUaCACgAUAGG- -5'
28738 5' -57 NC_006146.1 + 50886 0.69 0.725311
Target:  5'- gUGCCCGGaCUGGCGcGg--GUGCgg-CCu -3'
miRNA:   3'- -ACGGGCC-GGCCGU-CauaCACGauaGG- -5'
28738 5' -57 NC_006146.1 + 51744 0.66 0.88708
Target:  5'- cGCCCcgaGGUgGGCuucuUGUGcggGCUGUCCu -3'
miRNA:   3'- aCGGG---CCGgCCGuc--AUACa--CGAUAGG- -5'
28738 5' -57 NC_006146.1 + 54037 0.66 0.88708
Target:  5'- cGCCUGGCCGGgcCGG-AUGUGgUGg-- -3'
miRNA:   3'- aCGGGCCGGCC--GUCaUACACgAUagg -5'
28738 5' -57 NC_006146.1 + 58151 0.66 0.880184
Target:  5'- cGCCUGGCCGGCuuc---UGCg--CCu -3'
miRNA:   3'- aCGGGCCGGCCGucauacACGauaGG- -5'
28738 5' -57 NC_006146.1 + 59899 0.67 0.825316
Target:  5'- gGCCCcguccagaaagaGGuuGGUGGUcgcucggAUGuUGCUAUCCa -3'
miRNA:   3'- aCGGG------------CCggCCGUCA-------UAC-ACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 60101 0.66 0.880184
Target:  5'- cGCCgGGCCGGUuggcGUucUGUGCaaggggCCg -3'
miRNA:   3'- aCGGgCCGGCCGu---CAu-ACACGaua---GG- -5'
28738 5' -57 NC_006146.1 + 61582 0.66 0.880184
Target:  5'- gGCUCGGCCGuGCAGcag--GCU-UCCc -3'
miRNA:   3'- aCGGGCCGGC-CGUCauacaCGAuAGG- -5'
28738 5' -57 NC_006146.1 + 62636 0.67 0.817688
Target:  5'- gGCUgGGCuuucCGGCGGccUGccUGCUGUCCg -3'
miRNA:   3'- aCGGgCCG----GCCGUCauAC--ACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 64026 0.66 0.88708
Target:  5'- aGgCgGGCCGGCuuGUGcuUGUaCUGUCCc -3'
miRNA:   3'- aCgGgCCGGCCGu-CAU--ACAcGAUAGG- -5'
28738 5' -57 NC_006146.1 + 66507 0.67 0.817688
Target:  5'- aUGCaCCGGCCGGC-GUGauacacgccGCUGUCa -3'
miRNA:   3'- -ACG-GGCCGGCCGuCAUaca------CGAUAGg -5'
28738 5' -57 NC_006146.1 + 77963 0.66 0.880184
Target:  5'- gGCCgGaGCCGGUGGccuuggagGUGCcgGUCCu -3'
miRNA:   3'- aCGGgC-CGGCCGUCaua-----CACGa-UAGG- -5'
28738 5' -57 NC_006146.1 + 89120 0.67 0.817688
Target:  5'- aGCCCGGUgGGauuGGUAUuGUGCc-UCCc -3'
miRNA:   3'- aCGGGCCGgCCg--UCAUA-CACGauAGG- -5'
28738 5' -57 NC_006146.1 + 92332 0.7 0.695657
Target:  5'- gGCCCGGCCuggGGCAGcugaUAUGgggcgGCUcgCa -3'
miRNA:   3'- aCGGGCCGG---CCGUC----AUACa----CGAuaGg -5'
28738 5' -57 NC_006146.1 + 103687 0.69 0.758049
Target:  5'- gUGCCUGGCCGGCcaggcgaccggccacGGccaGUGgaAUCCc -3'
miRNA:   3'- -ACGGGCCGGCCG---------------UCauaCACgaUAGG- -5'
28738 5' -57 NC_006146.1 + 103842 0.66 0.873071
Target:  5'- gGCCCGuCUGGCAGag-GUGgUcUCCg -3'
miRNA:   3'- aCGGGCcGGCCGUCauaCACgAuAGG- -5'
28738 5' -57 NC_006146.1 + 106674 0.67 0.84256
Target:  5'- cGcCCCGGCCcaggcGCAG-AUGUGCc-UCCu -3'
miRNA:   3'- aC-GGGCCGGc----CGUCaUACACGauAGG- -5'
28738 5' -57 NC_006146.1 + 110586 0.68 0.809057
Target:  5'- cGCCaCGGuCCGGgucaGGUcgGUGggGUCCc -3'
miRNA:   3'- aCGG-GCC-GGCCg---UCAuaCACgaUAGG- -5'
28738 5' -57 NC_006146.1 + 112101 0.67 0.834448
Target:  5'- uUGCuuGGCuCGGgGGUGgaggugGUGCUGgugguggCCu -3'
miRNA:   3'- -ACGggCCG-GCCgUCAUa-----CACGAUa------GG- -5'
28738 5' -57 NC_006146.1 + 116876 0.69 0.754256
Target:  5'- gGCCCGGCCaGGCGcagcaGUGcCUGcUCCa -3'
miRNA:   3'- aCGGGCCGG-CCGUcaua-CAC-GAU-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.