miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28738 5' -57 NC_006146.1 + 5270 0.69 0.713521
Target:  5'- cGCCCGaGCCGGgGGUAgaaauuaaUGUCCa -3'
miRNA:   3'- aCGGGC-CGGCCgUCAUacacg---AUAGG- -5'
28738 5' -57 NC_006146.1 + 8950 0.73 0.52511
Target:  5'- uUGCCCGaaagggaaGCCGGgucuccCAGg--GUGCUAUCCa -3'
miRNA:   3'- -ACGGGC--------CGGCC------GUCauaCACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 9306 0.74 0.431823
Target:  5'- cUG-CCGGCCgGGCAGcAUuUGCUAUCCg -3'
miRNA:   3'- -ACgGGCCGG-CCGUCaUAcACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 12020 0.68 0.782251
Target:  5'- gUGCCCGaGaCCGGCAgcuacGUGgcggGUGCgg-CCa -3'
miRNA:   3'- -ACGGGC-C-GGCCGU-----CAUa---CACGauaGG- -5'
28738 5' -57 NC_006146.1 + 13843 0.66 0.880184
Target:  5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3'
miRNA:   3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5'
28738 5' -57 NC_006146.1 + 16921 0.66 0.880184
Target:  5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3'
miRNA:   3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5'
28738 5' -57 NC_006146.1 + 18666 0.71 0.625033
Target:  5'- aUGCCCGGCCuucGCAGgcgacGCUAUCa -3'
miRNA:   3'- -ACGGGCCGGc--CGUCauacaCGAUAGg -5'
28738 5' -57 NC_006146.1 + 19998 0.66 0.880184
Target:  5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3'
miRNA:   3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5'
28738 5' -57 NC_006146.1 + 23076 0.66 0.880184
Target:  5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3'
miRNA:   3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5'
28738 5' -57 NC_006146.1 + 26154 0.66 0.880184
Target:  5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3'
miRNA:   3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5'
28738 5' -57 NC_006146.1 + 29232 0.66 0.880184
Target:  5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3'
miRNA:   3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5'
28738 5' -57 NC_006146.1 + 33542 0.66 0.865747
Target:  5'- gUGCCCGGCUugccuGGCccug-GUGCUccUCCg -3'
miRNA:   3'- -ACGGGCCGG-----CCGucauaCACGAu-AGG- -5'
28738 5' -57 NC_006146.1 + 33899 0.68 0.773039
Target:  5'- gUGCCCGGCCuacccccguccuGGagcuccuccgucCGGUggGUGCgGUCCg -3'
miRNA:   3'- -ACGGGCCGG------------CC------------GUCAuaCACGaUAGG- -5'
28738 5' -57 NC_006146.1 + 34256 0.69 0.725311
Target:  5'- cGCCgGGCCGGCuGgggguUGUGCaccccCCg -3'
miRNA:   3'- aCGGgCCGGCCGuCau---ACACGaua--GG- -5'
28738 5' -57 NC_006146.1 + 39836 0.67 0.849702
Target:  5'- gGCCUcggccgcacagugGGCCGGCGGgggcUGUGUGC---CCg -3'
miRNA:   3'- aCGGG-------------CCGGCCGUC----AUACACGauaGG- -5'
28738 5' -57 NC_006146.1 + 41353 0.66 0.88708
Target:  5'- gGCCCagGGCCuGGCGGUgGUGgccgugGCUcuGUCUc -3'
miRNA:   3'- aCGGG--CCGG-CCGUCA-UACa-----CGA--UAGG- -5'
28738 5' -57 NC_006146.1 + 42716 0.67 0.828661
Target:  5'- cGCCCgcucgGGCUGGCAGccgcggauccgggcgGUGCUG-CCg -3'
miRNA:   3'- aCGGG-----CCGGCCGUCaua------------CACGAUaGG- -5'
28738 5' -57 NC_006146.1 + 43930 0.73 0.5154
Target:  5'- cGCCCGGCagucgGGCGGg--GU-CUAUCCa -3'
miRNA:   3'- aCGGGCCGg----CCGUCauaCAcGAUAGG- -5'
28738 5' -57 NC_006146.1 + 44770 0.66 0.891112
Target:  5'- gGCCCGGCgGGCGGggaacccagGCcggggAUCUg -3'
miRNA:   3'- aCGGGCCGgCCGUCauaca----CGa----UAGG- -5'
28738 5' -57 NC_006146.1 + 45913 0.67 0.850485
Target:  5'- cGCCCGGCCGGUgacc-GUGCcGUa- -3'
miRNA:   3'- aCGGGCCGGCCGucauaCACGaUAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.