miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28738 5' -57 NC_006146.1 + 161607 1.12 0.00151
Target:  5'- cUGCCCGGCCGGCAGUAUGUGCUAUCCa -3'
miRNA:   3'- -ACGGGCCGGCCGUCAUACACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 157358 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 156912 0.67 0.826155
Target:  5'- aGCCCGGCCgaGGCcugGGUGgcgGcGCUGacgggcUCCg -3'
miRNA:   3'- aCGGGCCGG--CCG---UCAUa--CaCGAU------AGG- -5'
28738 5' -57 NC_006146.1 + 154280 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 151202 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 150326 0.75 0.422153
Target:  5'- cGCCCgggcgcaGGCCGGCuAGUcUGUGCUccucuUCCg -3'
miRNA:   3'- aCGGG-------CCGGCCG-UCAuACACGAu----AGG- -5'
28738 5' -57 NC_006146.1 + 148124 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 145046 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 141968 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 140694 0.72 0.545716
Target:  5'- aGCCCGGCgGGCGcagcggcccucUGCUGUCCu -3'
miRNA:   3'- aCGGGCCGgCCGUcauac------ACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 138086 0.69 0.725311
Target:  5'- cGCCgGGCCGGCuGgggguUGUGCaccccCCg -3'
miRNA:   3'- aCGGgCCGGCCGuCau---ACACGaua--GG- -5'
28738 5' -57 NC_006146.1 + 137989 0.72 0.564579
Target:  5'- gGCCCGGCgGGguGggggGUGCg--CCc -3'
miRNA:   3'- aCGGGCCGgCCguCaua-CACGauaGG- -5'
28738 5' -57 NC_006146.1 + 137881 0.68 0.782251
Target:  5'- cGCCCcgGGCCGGCAGg--Gg---GUCCc -3'
miRNA:   3'- aCGGG--CCGGCCGUCauaCacgaUAGG- -5'
28738 5' -57 NC_006146.1 + 137595 0.66 0.865747
Target:  5'- aGCUCgGGCCGGgGGccggGUGCcccuggGUCCg -3'
miRNA:   3'- aCGGG-CCGGCCgUCaua-CACGa-----UAGG- -5'
28738 5' -57 NC_006146.1 + 132624 0.67 0.817688
Target:  5'- ----gGGCCGGCAGUGUG-GCccgcUCCa -3'
miRNA:   3'- acgggCCGGCCGUCAUACaCGau--AGG- -5'
28738 5' -57 NC_006146.1 + 132094 0.67 0.84256
Target:  5'- gGCCUGGCU-GCAG-AUGUGCaccCCg -3'
miRNA:   3'- aCGGGCCGGcCGUCaUACACGauaGG- -5'
28738 5' -57 NC_006146.1 + 127596 0.68 0.782251
Target:  5'- cGCgCCGGCCGGguGagaGUGaCUAaCCu -3'
miRNA:   3'- aCG-GGCCGGCCguCauaCAC-GAUaGG- -5'
28738 5' -57 NC_006146.1 + 121355 0.67 0.826155
Target:  5'- gGCCUGGCCGGC---GUG-GCc-UCCg -3'
miRNA:   3'- aCGGGCCGGCCGucaUACaCGauAGG- -5'
28738 5' -57 NC_006146.1 + 117915 0.68 0.809057
Target:  5'- gGCCaCGGCCGGCAGguccgccUGCgcacuaCCg -3'
miRNA:   3'- aCGG-GCCGGCCGUCauac---ACGaua---GG- -5'
28738 5' -57 NC_006146.1 + 116876 0.69 0.754256
Target:  5'- gGCCCGGCCaGGCGcagcaGUGcCUGcUCCa -3'
miRNA:   3'- aCGGGCCGG-CCGUcaua-CAC-GAU-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.