miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28738 5' -57 NC_006146.1 + 161607 1.12 0.00151
Target:  5'- cUGCCCGGCCGGCAGUAUGUGCUAUCCa -3'
miRNA:   3'- -ACGGGCCGGCCGUCAUACACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 150326 0.75 0.422153
Target:  5'- cGCCCgggcgcaGGCCGGCuAGUcUGUGCUccucuUCCg -3'
miRNA:   3'- aCGGG-------CCGGCCG-UCAuACACGAu----AGG- -5'
28738 5' -57 NC_006146.1 + 9306 0.74 0.431823
Target:  5'- cUG-CCGGCCgGGCAGcAUuUGCUAUCCg -3'
miRNA:   3'- -ACgGGCCGG-CCGUCaUAcACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 50734 0.73 0.5154
Target:  5'- gGCCCGGUCGG-GGUAcGUG-UGUCCg -3'
miRNA:   3'- aCGGGCCGGCCgUCAUaCACgAUAGG- -5'
28738 5' -57 NC_006146.1 + 43930 0.73 0.5154
Target:  5'- cGCCCGGCagucgGGCGGg--GU-CUAUCCa -3'
miRNA:   3'- aCGGGCCGg----CCGUCauaCAcGAUAGG- -5'
28738 5' -57 NC_006146.1 + 8950 0.73 0.52511
Target:  5'- uUGCCCGaaagggaaGCCGGgucuccCAGg--GUGCUAUCCa -3'
miRNA:   3'- -ACGGGC--------CGGCC------GUCauaCACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 140694 0.72 0.545716
Target:  5'- aGCCCGGCgGGCGcagcggcccucUGCUGUCCu -3'
miRNA:   3'- aCGGGCCGgCCGUcauac------ACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 137989 0.72 0.564579
Target:  5'- gGCCCGGCgGGguGggggGUGCg--CCc -3'
miRNA:   3'- aCGGGCCGgCCguCaua-CACGauaGG- -5'
28738 5' -57 NC_006146.1 + 18666 0.71 0.625033
Target:  5'- aUGCCCGGCCuucGCAGgcgacGCUAUCa -3'
miRNA:   3'- -ACGGGCCGGc--CGUCauacaCGAUAGg -5'
28738 5' -57 NC_006146.1 + 92332 0.7 0.695657
Target:  5'- gGCCCGGCCuggGGCAGcugaUAUGgggcgGCUcgCa -3'
miRNA:   3'- aCGGGCCGG---CCGUC----AUACa----CGAuaGg -5'
28738 5' -57 NC_006146.1 + 5270 0.69 0.713521
Target:  5'- cGCCCGaGCCGGgGGUAgaaauuaaUGUCCa -3'
miRNA:   3'- aCGGGC-CGGCCgUCAUacacg---AUAGG- -5'
28738 5' -57 NC_006146.1 + 50886 0.69 0.725311
Target:  5'- gUGCCCGGaCUGGCGcGg--GUGCgg-CCu -3'
miRNA:   3'- -ACGGGCC-GGCCGU-CauaCACGauaGG- -5'
28738 5' -57 NC_006146.1 + 34256 0.69 0.725311
Target:  5'- cGCCgGGCCGGCuGgggguUGUGCaccccCCg -3'
miRNA:   3'- aCGGgCCGGCCGuCau---ACACGaua--GG- -5'
28738 5' -57 NC_006146.1 + 138086 0.69 0.725311
Target:  5'- cGCCgGGCCGGCuGgggguUGUGCaccccCCg -3'
miRNA:   3'- aCGGgCCGGCCGuCau---ACACGaua--GG- -5'
28738 5' -57 NC_006146.1 + 116876 0.69 0.754256
Target:  5'- gGCCCGGCCaGGCGcagcaGUGcCUGcUCCa -3'
miRNA:   3'- aCGGGCCGG-CCGUcaua-CAC-GAU-AGG- -5'
28738 5' -57 NC_006146.1 + 103687 0.69 0.758049
Target:  5'- gUGCCUGGCCGGCcaggcgaccggccacGGccaGUGgaAUCCc -3'
miRNA:   3'- -ACGGGCCGGCCG---------------UCauaCACgaUAGG- -5'
28738 5' -57 NC_006146.1 + 33899 0.68 0.773039
Target:  5'- gUGCCCGGCCuacccccguccuGGagcuccuccgucCGGUggGUGCgGUCCg -3'
miRNA:   3'- -ACGGGCCGG------------CC------------GUCAuaCACGaUAGG- -5'
28738 5' -57 NC_006146.1 + 127596 0.68 0.782251
Target:  5'- cGCgCCGGCCGGguGagaGUGaCUAaCCu -3'
miRNA:   3'- aCG-GGCCGGCCguCauaCAC-GAUaGG- -5'
28738 5' -57 NC_006146.1 + 12020 0.68 0.782251
Target:  5'- gUGCCCGaGaCCGGCAgcuacGUGgcggGUGCgg-CCa -3'
miRNA:   3'- -ACGGGC-C-GGCCGU-----CAUa---CACGauaGG- -5'
28738 5' -57 NC_006146.1 + 137881 0.68 0.782251
Target:  5'- cGCCCcgGGCCGGCAGg--Gg---GUCCc -3'
miRNA:   3'- aCGGG--CCGGCCGUCauaCacgaUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.