miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2874 3' -55.3 NC_001493.1 + 5399 1.14 0.001613
Target:  5'- uCCUCCGCUCAGACUCAGAGACGACCCg -3'
miRNA:   3'- -GGAGGCGAGUCUGAGUCUCUGCUGGG- -5'
2874 3' -55.3 NC_001493.1 + 7065 0.68 0.835481
Target:  5'- --aCCGUUCAGGCUCucauAGAUGAgCCu -3'
miRNA:   3'- ggaGGCGAGUCUGAGuc--UCUGCUgGG- -5'
2874 3' -55.3 NC_001493.1 + 7169 0.68 0.835481
Target:  5'- --aCCGUUCAGGCUCucauAGAUGAgCCu -3'
miRNA:   3'- ggaGGCGAGUCUGAGuc--UCUGCUgGG- -5'
2874 3' -55.3 NC_001493.1 + 7355 0.72 0.665562
Target:  5'- --aCCGUUCAGGCUCucauAGACGAgCCu -3'
miRNA:   3'- ggaGGCGAGUCUGAGuc--UCUGCUgGG- -5'
2874 3' -55.3 NC_001493.1 + 9331 0.66 0.913601
Target:  5'- uCCUCCGCggaGGACgUGGAGcgcguggacGCGuCCCg -3'
miRNA:   3'- -GGAGGCGag-UCUGaGUCUC---------UGCuGGG- -5'
2874 3' -55.3 NC_001493.1 + 10005 0.66 0.913013
Target:  5'- gCCUCCGCguagcucgguggcUgGGACgauauggugagCAGGGAUGcGCCCg -3'
miRNA:   3'- -GGAGGCG-------------AgUCUGa----------GUCUCUGC-UGGG- -5'
2874 3' -55.3 NC_001493.1 + 10629 0.79 0.317276
Target:  5'- uCCUCCGCggUCgAGACUCucGGGACGcGCCCg -3'
miRNA:   3'- -GGAGGCG--AG-UCUGAGu-CUCUGC-UGGG- -5'
2874 3' -55.3 NC_001493.1 + 14962 0.69 0.827153
Target:  5'- gCUcCCGCUCc-GCUCcuGGACGACCUc -3'
miRNA:   3'- gGA-GGCGAGucUGAGucUCUGCUGGG- -5'
2874 3' -55.3 NC_001493.1 + 15433 0.66 0.930143
Target:  5'- gUUCCGgaCGGGgaguucugcUUCGGGGACGGCgCCu -3'
miRNA:   3'- gGAGGCgaGUCU---------GAGUCUCUGCUG-GG- -5'
2874 3' -55.3 NC_001493.1 + 16940 0.66 0.919352
Target:  5'- --gCC-CUCGGGgUCAcaucGAGAUGGCCCa -3'
miRNA:   3'- ggaGGcGAGUCUgAGU----CUCUGCUGGG- -5'
2874 3' -55.3 NC_001493.1 + 19401 0.68 0.854705
Target:  5'- --cCCGCUCgacaugacgauguccGGGCUCAGAGAgGgGCUCg -3'
miRNA:   3'- ggaGGCGAG---------------UCUGAGUCUCUgC-UGGG- -5'
2874 3' -55.3 NC_001493.1 + 20556 0.67 0.888258
Target:  5'- aCCUggcaGCUCGGGCUCAucaugcucGAGACGAUa- -3'
miRNA:   3'- -GGAgg--CGAGUCUGAGU--------CUCUGCUGgg -5'
2874 3' -55.3 NC_001493.1 + 20702 0.72 0.624785
Target:  5'- cCCaUCCGUUCgAGGCUaGGAuGCGGCCCa -3'
miRNA:   3'- -GG-AGGCGAG-UCUGAgUCUcUGCUGGG- -5'
2874 3' -55.3 NC_001493.1 + 21401 0.66 0.924866
Target:  5'- uUCUCCcgucaucaCUCGGuCUCcGAGGCGuCCCg -3'
miRNA:   3'- -GGAGGc-------GAGUCuGAGuCUCUGCuGGG- -5'
2874 3' -55.3 NC_001493.1 + 27084 0.69 0.818649
Target:  5'- aCUCgGaCUCGGACUCGGAcucgGACucgGACUCg -3'
miRNA:   3'- gGAGgC-GAGUCUGAGUCU----CUG---CUGGG- -5'
2874 3' -55.3 NC_001493.1 + 27619 0.71 0.685822
Target:  5'- --cCCGCgCGGGCUCGG-GAuCGGCCCc -3'
miRNA:   3'- ggaGGCGaGUCUGAGUCuCU-GCUGGG- -5'
2874 3' -55.3 NC_001493.1 + 28243 0.66 0.927006
Target:  5'- -gUCUGCUCGcggaguacgagagacGACUgGGuAGACGGCCg -3'
miRNA:   3'- ggAGGCGAGU---------------CUGAgUC-UCUGCUGGg -5'
2874 3' -55.3 NC_001493.1 + 33434 0.67 0.888258
Target:  5'- gCUCuCGUUCGGug-CGGGGACGGUCCg -3'
miRNA:   3'- gGAG-GCGAGUCugaGUCUCUGCUGGG- -5'
2874 3' -55.3 NC_001493.1 + 36382 0.69 0.827153
Target:  5'- gCCUcgaCCGCggucUUAGGCUCGG-GGCgGGCCCu -3'
miRNA:   3'- -GGA---GGCG----AGUCUGAGUCuCUG-CUGGG- -5'
2874 3' -55.3 NC_001493.1 + 40365 0.7 0.773765
Target:  5'- gUCUCU--UCAG-CUCGGGGAUGAUCCg -3'
miRNA:   3'- -GGAGGcgAGUCuGAGUCUCUGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.