miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2874 3' -55.3 NC_001493.1 + 10629 0.79 0.317276
Target:  5'- uCCUCCGCggUCgAGACUCucGGGACGcGCCCg -3'
miRNA:   3'- -GGAGGCG--AG-UCUGAGu-CUCUGC-UGGG- -5'
2874 3' -55.3 NC_001493.1 + 102123 0.66 0.939984
Target:  5'- --aUCGgUCGGGCgggCAcAGGCGGCCCu -3'
miRNA:   3'- ggaGGCgAGUCUGa--GUcUCUGCUGGG- -5'
2874 3' -55.3 NC_001493.1 + 97097 0.66 0.935182
Target:  5'- cCCggCCGUUaucgaaaaaaCAGAauugCGGGGACGACUCg -3'
miRNA:   3'- -GGa-GGCGA----------GUCUga--GUCUCUGCUGGG- -5'
2874 3' -55.3 NC_001493.1 + 52909 0.66 0.935182
Target:  5'- cCCUCgGagUCAGuCUCGaGGACGaACCCc -3'
miRNA:   3'- -GGAGgCg-AGUCuGAGUcUCUGC-UGGG- -5'
2874 3' -55.3 NC_001493.1 + 130987 0.66 0.930143
Target:  5'- gUUCCGgaCGGGgaguucugcUUCGGGGACGGCgCCu -3'
miRNA:   3'- gGAGGCgaGUCU---------GAGUCUCUGCUG-GG- -5'
2874 3' -55.3 NC_001493.1 + 54554 0.66 0.930143
Target:  5'- aUCUgUGCUUGuGGCUguGAGGCGAUCg -3'
miRNA:   3'- -GGAgGCGAGU-CUGAguCUCUGCUGGg -5'
2874 3' -55.3 NC_001493.1 + 15433 0.66 0.930143
Target:  5'- gUUCCGgaCGGGgaguucugcUUCGGGGACGGCgCCu -3'
miRNA:   3'- gGAGGCgaGUCU---------GAGUCUCUGCUG-GG- -5'
2874 3' -55.3 NC_001493.1 + 21401 0.66 0.924866
Target:  5'- uUCUCCcgucaucaCUCGGuCUCcGAGGCGuCCCg -3'
miRNA:   3'- -GGAGGc-------GAGUCuGAGuCUCUGCuGGG- -5'
2874 3' -55.3 NC_001493.1 + 124885 0.66 0.913601
Target:  5'- uCCUCCGCggaGGACgUGGAGcgcguggacGCGuCCCg -3'
miRNA:   3'- -GGAGGCGag-UCUGaGUCUC---------UGCuGGG- -5'
2874 3' -55.3 NC_001493.1 + 90824 0.66 0.913601
Target:  5'- -gUCUGCUCGaacggccucucGACUCGGAGccgGCGGgCCu -3'
miRNA:   3'- ggAGGCGAGU-----------CUGAGUCUC---UGCUgGG- -5'
2874 3' -55.3 NC_001493.1 + 9331 0.66 0.913601
Target:  5'- uCCUCCGCggaGGACgUGGAGcgcguggacGCGuCCCg -3'
miRNA:   3'- -GGAGGCGag-UCUGaGUCUC---------UGCuGGG- -5'
2874 3' -55.3 NC_001493.1 + 126183 0.79 0.317276
Target:  5'- uCCUCCGCggUCgAGACUCucGGGACGcGCCCg -3'
miRNA:   3'- -GGAGGCG--AG-UCUGAGu-CUCUGC-UGGG- -5'
2874 3' -55.3 NC_001493.1 + 27619 0.71 0.685822
Target:  5'- --cCCGCgCGGGCUCGG-GAuCGGCCCc -3'
miRNA:   3'- ggaGGCGaGUCUGAGUCuCU-GCUGGG- -5'
2874 3' -55.3 NC_001493.1 + 45871 0.69 0.801143
Target:  5'- uCCUCgGCgagaugugCGGGCUgCGcGAGGCGGCCa -3'
miRNA:   3'- -GGAGgCGa-------GUCUGA-GU-CUCUGCUGGg -5'
2874 3' -55.3 NC_001493.1 + 14962 0.69 0.827153
Target:  5'- gCUcCCGCUCc-GCUCcuGGACGACCUc -3'
miRNA:   3'- gGA-GGCGAGucUGAGucUCUGCUGGG- -5'
2874 3' -55.3 NC_001493.1 + 36382 0.69 0.827153
Target:  5'- gCCUcgaCCGCggucUUAGGCUCGG-GGCgGGCCCu -3'
miRNA:   3'- -GGA---GGCG----AGUCUGAGUCuCUG-CUGGG- -5'
2874 3' -55.3 NC_001493.1 + 42052 0.68 0.859334
Target:  5'- aCC-CCGUUCAuuCgugaUAGGGGCGGCCCc -3'
miRNA:   3'- -GGaGGCGAGUcuGa---GUCUCUGCUGGG- -5'
2874 3' -55.3 NC_001493.1 + 53863 0.67 0.907613
Target:  5'- gCUuuGCUCGGuuucuaGCUCGGgagcccGGGCGAgCCa -3'
miRNA:   3'- gGAggCGAGUC------UGAGUC------UCUGCUgGG- -5'
2874 3' -55.3 NC_001493.1 + 102300 0.66 0.939984
Target:  5'- gCUCCccCUCGGuGCUCAGGGcCGccuguGCCCg -3'
miRNA:   3'- gGAGGc-GAGUC-UGAGUCUCuGC-----UGGG- -5'
2874 3' -55.3 NC_001493.1 + 5399 1.14 0.001613
Target:  5'- uCCUCCGCUCAGACUCAGAGACGACCCg -3'
miRNA:   3'- -GGAGGCGAGUCUGAGUCUCUGCUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.