miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2874 5' -56.9 NC_001493.1 + 36403 0.67 0.834306
Target:  5'- uCGGGGCGgGcCCUCuuGGuucGAGGGGGCu -3'
miRNA:   3'- -GCUCUGCgC-GGAGugCU---CUUCUCCGc -5'
2874 5' -56.9 NC_001493.1 + 45064 0.67 0.799997
Target:  5'- gCGAGAuauuUGCGCC-CugGAGAAacGGGCa -3'
miRNA:   3'- -GCUCU----GCGCGGaGugCUCUUc-UCCGc -5'
2874 5' -56.9 NC_001493.1 + 49858 0.66 0.842449
Target:  5'- --cGACGCGCuCUU-CGAGGAG-GGUGg -3'
miRNA:   3'- gcuCUGCGCG-GAGuGCUCUUCuCCGC- -5'
2874 5' -56.9 NC_001493.1 + 56448 0.66 0.858161
Target:  5'- aCGAcGACcaacgaGCGCCUCG-GGGAAGugauGGCGu -3'
miRNA:   3'- -GCU-CUG------CGCGGAGUgCUCUUCu---CCGC- -5'
2874 5' -56.9 NC_001493.1 + 65329 0.66 0.880203
Target:  5'- cCGcGGCGUGCCguUCGCGcGGgcGAuGGCGg -3'
miRNA:   3'- -GCuCUGCGCGG--AGUGC-UCuuCU-CCGC- -5'
2874 5' -56.9 NC_001493.1 + 69763 0.66 0.858161
Target:  5'- gCGGGACGUGUCcccgaUCGCGAacGAGccGAGGCc -3'
miRNA:   3'- -GCUCUGCGCGG-----AGUGCU--CUU--CUCCGc -5'
2874 5' -56.9 NC_001493.1 + 79816 0.72 0.543574
Target:  5'- cCGAGACGUGUauaACGAGAAGAuGGuCGg -3'
miRNA:   3'- -GCUCUGCGCGgagUGCUCUUCU-CC-GC- -5'
2874 5' -56.9 NC_001493.1 + 88429 0.72 0.523905
Target:  5'- uCGAGGCGCGaCUCA-GGGAgauGGAGGCc -3'
miRNA:   3'- -GCUCUGCGCgGAGUgCUCU---UCUCCGc -5'
2874 5' -56.9 NC_001493.1 + 91000 0.67 0.834306
Target:  5'- uCGAGGCcCGCCggcUC-CGAGucGAGAGGCc -3'
miRNA:   3'- -GCUCUGcGCGG---AGuGCUC--UUCUCCGc -5'
2874 5' -56.9 NC_001493.1 + 91099 0.73 0.494935
Target:  5'- cCGGGAUGCG-UUCACGAGAaguuugaucuGGGGGUGa -3'
miRNA:   3'- -GCUCUGCGCgGAGUGCUCU----------UCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 108779 0.73 0.494935
Target:  5'- aGcGGCGCgGCUccgaUCACGGGAGGAGGUGc -3'
miRNA:   3'- gCuCUGCG-CGG----AGUGCUCUUCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 109156 0.67 0.80882
Target:  5'- -uGGACaGcCGCCgCACGGGGAGAgauGGCGa -3'
miRNA:   3'- gcUCUG-C-GCGGaGUGCUCUUCU---CCGC- -5'
2874 5' -56.9 NC_001493.1 + 110627 0.71 0.613953
Target:  5'- -aGGACGUGUCUCACGAcugGAAG-GGCc -3'
miRNA:   3'- gcUCUGCGCGGAGUGCU---CUUCuCCGc -5'
2874 5' -56.9 NC_001493.1 + 114152 0.66 0.858161
Target:  5'- -aGGACGCGCCaaUCGCGGGGAcguaccacauGAGcGUGu -3'
miRNA:   3'- gcUCUGCGCGG--AGUGCUCUU----------CUC-CGC- -5'
2874 5' -56.9 NC_001493.1 + 117770 0.72 0.533707
Target:  5'- gGAGugGCcacgaggaggaGUCUCugGAgGAAGAGGUGa -3'
miRNA:   3'- gCUCugCG-----------CGGAGugCU-CUUCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 119297 0.7 0.663742
Target:  5'- cCGAGGCGCGUaccgCUCugauCGAguggguggagaagGAGGGGGCGa -3'
miRNA:   3'- -GCUCUGCGCG----GAGu---GCU-------------CUUCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 119814 0.68 0.78191
Target:  5'- aCGGGACGCGUgUCuCcGGAAGGGGa- -3'
miRNA:   3'- -GCUCUGCGCGgAGuGcUCUUCUCCgc -5'
2874 5' -56.9 NC_001493.1 + 120766 0.73 0.48544
Target:  5'- uGAGGCGCGUCUCG-GGGAAcGAauGGCGg -3'
miRNA:   3'- gCUCUGCGCGGAGUgCUCUU-CU--CCGC- -5'
2874 5' -56.9 NC_001493.1 + 120914 1.08 0.002634
Target:  5'- cCGAGACGCGCCUCACGAGAAGAGGCGc -3'
miRNA:   3'- -GCUCUGCGCGGAGUGCUCUUCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 124056 0.68 0.772664
Target:  5'- gCGAGACGCGCggcccCUcCACGGuucGAAGcGGGCa -3'
miRNA:   3'- -GCUCUGCGCG-----GA-GUGCU---CUUC-UCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.