Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2874 | 5' | -56.9 | NC_001493.1 | + | 2216 | 0.72 | 0.533707 |
Target: 5'- gGAGugGCcacgaggaggaGUCUCugGAgGAAGAGGUGa -3' miRNA: 3'- gCUCugCG-----------CGGAGugCU-CUUCUCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 3743 | 0.7 | 0.663742 |
Target: 5'- cCGAGGCGCGUaccgCUCugauCGAguggguggagaagGAGGGGGCGa -3' miRNA: 3'- -GCUCUGCGCG----GAGu---GCU-------------CUUCUCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 4260 | 0.68 | 0.78191 |
Target: 5'- aCGGGACGCGUgUCuCcGGAAGGGGa- -3' miRNA: 3'- -GCUCUGCGCGgAGuGcUCUUCUCCgc -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 5212 | 0.73 | 0.48544 |
Target: 5'- uGAGGCGCGUCUCG-GGGAAcGAauGGCGg -3' miRNA: 3'- gCUCUGCGCGGAGUgCUCUU-CU--CCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 5360 | 1.08 | 0.002634 |
Target: 5'- cCGAGACGCGCCUCACGAGAAGAGGCGc -3' miRNA: 3'- -GCUCUGCGCGGAGUGCUCUUCUCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 8501 | 0.68 | 0.763293 |
Target: 5'- gCGAGACGCGCggcccCUcCACGuucGAAGcGGGCa -3' miRNA: 3'- -GCUCUGCGCG-----GA-GUGCu--CUUC-UCCGc -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 9244 | 0.66 | 0.864972 |
Target: 5'- -aGGAUGCGUCgUCGgGAcaggaccGggGAGGCGg -3' miRNA: 3'- gcUCUGCGCGG-AGUgCU-------CuuCUCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 10123 | 0.67 | 0.817484 |
Target: 5'- gCGAuuCGCGaCCUCACGGGGccauacAGAGGg- -3' miRNA: 3'- -GCUcuGCGC-GGAGUGCUCU------UCUCCgc -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 10648 | 0.66 | 0.842449 |
Target: 5'- uCGGGACGCGCCcgaucgCGCGAGcuccccGGGUu -3' miRNA: 3'- -GCUCUGCGCGGa-----GUGCUCuuc---UCCGc -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 13477 | 0.68 | 0.791025 |
Target: 5'- gGAGGCGUgcgccgucgaucGCCUCugcaucggggGgGGGAGGAGGCu -3' miRNA: 3'- gCUCUGCG------------CGGAG----------UgCUCUUCUCCGc -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 19638 | 0.67 | 0.825983 |
Target: 5'- uGAG-CGuCGCCauacccguUCugGAGAGG-GGCGa -3' miRNA: 3'- gCUCuGC-GCGG--------AGugCUCUUCuCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 19902 | 0.72 | 0.523905 |
Target: 5'- gGAGuCGCGCCggCcCGaAGGAGAGGUGa -3' miRNA: 3'- gCUCuGCGCGGa-GuGC-UCUUCUCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 21406 | 0.66 | 0.858161 |
Target: 5'- gCGGcGAUGCgGCUUCACcAGggGcGGCGg -3' miRNA: 3'- -GCU-CUGCG-CGGAGUGcUCuuCuCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 24321 | 0.68 | 0.78191 |
Target: 5'- cCGAG-CGCGUCUUGCGAaGcuGGGCGg -3' miRNA: 3'- -GCUCuGCGCGGAGUGCUcUucUCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 26341 | 0.67 | 0.799997 |
Target: 5'- aCGAGGCaCGgUUCucucCGAGAAGAGaGCGa -3' miRNA: 3'- -GCUCUGcGCgGAGu---GCUCUUCUC-CGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 26479 | 0.68 | 0.753808 |
Target: 5'- cCGAGA-GCGUC-CAUGGGAgagGGGGGUGg -3' miRNA: 3'- -GCUCUgCGCGGaGUGCUCU---UCUCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 28442 | 0.69 | 0.734528 |
Target: 5'- gGAGA-GCGCCacgUUGCGAGc-GAGGCGg -3' miRNA: 3'- gCUCUgCGCGG---AGUGCUCuuCUCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 28743 | 0.72 | 0.567483 |
Target: 5'- cCGAGAUGCGCacggccgcuggagCGCGGGAuggacucGAGGCGg -3' miRNA: 3'- -GCUCUGCGCGga-----------GUGCUCUu------CUCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 35676 | 0.67 | 0.80882 |
Target: 5'- gGAGAagacgaGCGCCgcaGCGAGAGG-GGUc -3' miRNA: 3'- gCUCUg-----CGCGGag-UGCUCUUCuCCGc -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 36218 | 0.71 | 0.583572 |
Target: 5'- cCGGGGCG-GCCUgCGCGGGGGugcucaguGGGGCGg -3' miRNA: 3'- -GCUCUGCgCGGA-GUGCUCUU--------CUCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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