miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2874 5' -56.9 NC_001493.1 + 120914 1.08 0.002634
Target:  5'- cCGAGACGCGCCUCACGAGAAGAGGCGc -3'
miRNA:   3'- -GCUCUGCGCGGAGUGCUCUUCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 5360 1.08 0.002634
Target:  5'- cCGAGACGCGCCUCACGAGAAGAGGCGc -3'
miRNA:   3'- -GCUCUGCGCGGAGUGCUCUUCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 5212 0.73 0.48544
Target:  5'- uGAGGCGCGUCUCG-GGGAAcGAauGGCGg -3'
miRNA:   3'- gCUCUGCGCGGAGUgCUCUU-CU--CCGC- -5'
2874 5' -56.9 NC_001493.1 + 120766 0.73 0.48544
Target:  5'- uGAGGCGCGUCUCG-GGGAAcGAauGGCGg -3'
miRNA:   3'- gCUCUGCGCGGAGUgCUCUU-CU--CCGC- -5'
2874 5' -56.9 NC_001493.1 + 108779 0.73 0.494935
Target:  5'- aGcGGCGCgGCUccgaUCACGGGAGGAGGUGc -3'
miRNA:   3'- gCuCUGCG-CGG----AGUGCUCUUCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 91099 0.73 0.494935
Target:  5'- cCGGGAUGCG-UUCACGAGAaguuugaucuGGGGGUGa -3'
miRNA:   3'- -GCUCUGCGCgGAGUGCUCU----------UCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 88429 0.72 0.523905
Target:  5'- uCGAGGCGCGaCUCA-GGGAgauGGAGGCc -3'
miRNA:   3'- -GCUCUGCGCgGAGUgCUCU---UCUCCGc -5'
2874 5' -56.9 NC_001493.1 + 19902 0.72 0.523905
Target:  5'- gGAGuCGCGCCggCcCGaAGGAGAGGUGa -3'
miRNA:   3'- gCUCuGCGCGGa-GuGC-UCUUCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 2216 0.72 0.533707
Target:  5'- gGAGugGCcacgaggaggaGUCUCugGAgGAAGAGGUGa -3'
miRNA:   3'- gCUCugCG-----------CGGAGugCU-CUUCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 117770 0.72 0.533707
Target:  5'- gGAGugGCcacgaggaggaGUCUCugGAgGAAGAGGUGa -3'
miRNA:   3'- gCUCugCG-----------CGGAGugCU-CUUCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 79816 0.72 0.543574
Target:  5'- cCGAGACGUGUauaACGAGAAGAuGGuCGg -3'
miRNA:   3'- -GCUCUGCGCGgagUGCUCUUCU-CC-GC- -5'
2874 5' -56.9 NC_001493.1 + 28743 0.72 0.567483
Target:  5'- cCGAGAUGCGCacggccgcuggagCGCGGGAuggacucGAGGCGg -3'
miRNA:   3'- -GCUCUGCGCGga-----------GUGCUCUu------CUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 36218 0.71 0.583572
Target:  5'- cCGGGGCG-GCCUgCGCGGGGGugcucaguGGGGCGg -3'
miRNA:   3'- -GCUCUGCgCGGA-GUGCUCUU--------CUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 110627 0.71 0.613953
Target:  5'- -aGGACGUGUCUCACGAcugGAAG-GGCc -3'
miRNA:   3'- gcUCUGCGCGGAGUGCU---CUUCuCCGc -5'
2874 5' -56.9 NC_001493.1 + 119297 0.7 0.663742
Target:  5'- cCGAGGCGCGUaccgCUCugauCGAguggguggagaagGAGGGGGCGa -3'
miRNA:   3'- -GCUCUGCGCG----GAGu---GCU-------------CUUCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 3743 0.7 0.663742
Target:  5'- cCGAGGCGCGUaccgCUCugauCGAguggguggagaagGAGGGGGCGa -3'
miRNA:   3'- -GCUCUGCGCG----GAGu---GCU-------------CUUCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 28442 0.69 0.734528
Target:  5'- gGAGA-GCGCCacgUUGCGAGc-GAGGCGg -3'
miRNA:   3'- gCUCUgCGCGG---AGUGCUCuuCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 26479 0.68 0.753808
Target:  5'- cCGAGA-GCGUC-CAUGGGAgagGGGGGUGg -3'
miRNA:   3'- -GCUCUgCGCGGaGUGCUCU---UCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 8501 0.68 0.763293
Target:  5'- gCGAGACGCGCggcccCUcCACGuucGAAGcGGGCa -3'
miRNA:   3'- -GCUCUGCGCG-----GA-GUGCu--CUUC-UCCGc -5'
2874 5' -56.9 NC_001493.1 + 124056 0.68 0.772664
Target:  5'- gCGAGACGCGCggcccCUcCACGGuucGAAGcGGGCa -3'
miRNA:   3'- -GCUCUGCGCG-----GA-GUGCU---CUUC-UCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.