miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2874 5' -56.9 NC_001493.1 + 10648 0.66 0.842449
Target:  5'- uCGGGACGCGCCcgaucgCGCGAGcuccccGGGUu -3'
miRNA:   3'- -GCUCUGCGCGGa-----GUGCUCuuc---UCCGc -5'
2874 5' -56.9 NC_001493.1 + 13477 0.68 0.791025
Target:  5'- gGAGGCGUgcgccgucgaucGCCUCugcaucggggGgGGGAGGAGGCu -3'
miRNA:   3'- gCUCUGCG------------CGGAG----------UgCUCUUCUCCGc -5'
2874 5' -56.9 NC_001493.1 + 129031 0.68 0.791025
Target:  5'- gGAGGCGUgcgccgucgaucGCCUCugcaucggggGgGGGAGGAGGCu -3'
miRNA:   3'- gCUCUGCG------------CGGAG----------UgCUCUUCUCCGc -5'
2874 5' -56.9 NC_001493.1 + 45064 0.67 0.799997
Target:  5'- gCGAGAuauuUGCGCC-CugGAGAAacGGGCa -3'
miRNA:   3'- -GCUCU----GCGCGGaGugCUCUUc-UCCGc -5'
2874 5' -56.9 NC_001493.1 + 35676 0.67 0.80882
Target:  5'- gGAGAagacgaGCGCCgcaGCGAGAGG-GGUc -3'
miRNA:   3'- gCUCUg-----CGCGGag-UGCUCUUCuCCGc -5'
2874 5' -56.9 NC_001493.1 + 10123 0.67 0.817484
Target:  5'- gCGAuuCGCGaCCUCACGGGGccauacAGAGGg- -3'
miRNA:   3'- -GCUcuGCGC-GGAGUGCUCU------UCUCCgc -5'
2874 5' -56.9 NC_001493.1 + 125678 0.67 0.817484
Target:  5'- gCGAuuCGCGaCCUCACGGGGccauacAGAGGg- -3'
miRNA:   3'- -GCUcuGCGC-GGAGUGCUCU------UCUCCgc -5'
2874 5' -56.9 NC_001493.1 + 19638 0.67 0.825983
Target:  5'- uGAG-CGuCGCCauacccguUCugGAGAGG-GGCGa -3'
miRNA:   3'- gCUCuGC-GCGG--------AGugCUCUUCuCCGC- -5'
2874 5' -56.9 NC_001493.1 + 36403 0.67 0.834306
Target:  5'- uCGGGGCGgGcCCUCuuGGuucGAGGGGGCu -3'
miRNA:   3'- -GCUCUGCgC-GGAGugCU---CUUCUCCGc -5'
2874 5' -56.9 NC_001493.1 + 119814 0.68 0.78191
Target:  5'- aCGGGACGCGUgUCuCcGGAAGGGGa- -3'
miRNA:   3'- -GCUCUGCGCGgAGuGcUCUUCUCCgc -5'
2874 5' -56.9 NC_001493.1 + 24321 0.68 0.78191
Target:  5'- cCGAG-CGCGUCUUGCGAaGcuGGGCGg -3'
miRNA:   3'- -GCUCuGCGCGGAGUGCUcUucUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 4260 0.68 0.78191
Target:  5'- aCGGGACGCGUgUCuCcGGAAGGGGa- -3'
miRNA:   3'- -GCUCUGCGCGgAGuGcUCUUCUCCgc -5'
2874 5' -56.9 NC_001493.1 + 120766 0.73 0.48544
Target:  5'- uGAGGCGCGUCUCG-GGGAAcGAauGGCGg -3'
miRNA:   3'- gCUCUGCGCGGAGUgCUCUU-CU--CCGC- -5'
2874 5' -56.9 NC_001493.1 + 108779 0.73 0.494935
Target:  5'- aGcGGCGCgGCUccgaUCACGGGAGGAGGUGc -3'
miRNA:   3'- gCuCUGCG-CGG----AGUGCUCUUCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 91099 0.73 0.494935
Target:  5'- cCGGGAUGCG-UUCACGAGAaguuugaucuGGGGGUGa -3'
miRNA:   3'- -GCUCUGCGCgGAGUGCUCU----------UCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 19902 0.72 0.523905
Target:  5'- gGAGuCGCGCCggCcCGaAGGAGAGGUGa -3'
miRNA:   3'- gCUCuGCGCGGa-GuGC-UCUUCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 36218 0.71 0.583572
Target:  5'- cCGGGGCG-GCCUgCGCGGGGGugcucaguGGGGCGg -3'
miRNA:   3'- -GCUCUGCgCGGA-GUGCUCUU--------CUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 110627 0.71 0.613953
Target:  5'- -aGGACGUGUCUCACGAcugGAAG-GGCc -3'
miRNA:   3'- gcUCUGCGCGGAGUGCU---CUUCuCCGc -5'
2874 5' -56.9 NC_001493.1 + 3743 0.7 0.663742
Target:  5'- cCGAGGCGCGUaccgCUCugauCGAguggguggagaagGAGGGGGCGa -3'
miRNA:   3'- -GCUCUGCGCG----GAGu---GCU-------------CUUCUCCGC- -5'
2874 5' -56.9 NC_001493.1 + 119297 0.7 0.663742
Target:  5'- cCGAGGCGCGUaccgCUCugauCGAguggguggagaagGAGGGGGCGa -3'
miRNA:   3'- -GCUCUGCGCG----GAGu---GCU-------------CUUCUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.