Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2874 | 5' | -56.9 | NC_001493.1 | + | 120914 | 1.08 | 0.002634 |
Target: 5'- cCGAGACGCGCCUCACGAGAAGAGGCGc -3' miRNA: 3'- -GCUCUGCGCGGAGUGCUCUUCUCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 26341 | 0.67 | 0.799997 |
Target: 5'- aCGAGGCaCGgUUCucucCGAGAAGAGaGCGa -3' miRNA: 3'- -GCUCUGcGCgGAGu---GCUCUUCUC-CGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 26479 | 0.68 | 0.753808 |
Target: 5'- cCGAGA-GCGUC-CAUGGGAgagGGGGGUGg -3' miRNA: 3'- -GCUCUgCGCGGaGUGCUCU---UCUCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 28442 | 0.69 | 0.734528 |
Target: 5'- gGAGA-GCGCCacgUUGCGAGc-GAGGCGg -3' miRNA: 3'- gCUCUgCGCGG---AGUGCUCuuCUCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 79816 | 0.72 | 0.543574 |
Target: 5'- cCGAGACGUGUauaACGAGAAGAuGGuCGg -3' miRNA: 3'- -GCUCUGCGCGgagUGCUCUUCU-CC-GC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 2216 | 0.72 | 0.533707 |
Target: 5'- gGAGugGCcacgaggaggaGUCUCugGAgGAAGAGGUGa -3' miRNA: 3'- gCUCugCG-----------CGGAGugCU-CUUCUCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 69763 | 0.66 | 0.858161 |
Target: 5'- gCGGGACGUGUCcccgaUCGCGAacGAGccGAGGCc -3' miRNA: 3'- -GCUCUGCGCGG-----AGUGCU--CUU--CUCCGc -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 21406 | 0.66 | 0.858161 |
Target: 5'- gCGGcGAUGCgGCUUCACcAGggGcGGCGg -3' miRNA: 3'- -GCU-CUGCG-CGGAGUGcUCuuCuCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 91000 | 0.67 | 0.834306 |
Target: 5'- uCGAGGCcCGCCggcUC-CGAGucGAGAGGCc -3' miRNA: 3'- -GCUCUGcGCGG---AGuGCUC--UUCUCCGc -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 124056 | 0.68 | 0.772664 |
Target: 5'- gCGAGACGCGCggcccCUcCACGGuucGAAGcGGGCa -3' miRNA: 3'- -GCUCUGCGCG-----GA-GUGCU---CUUC-UCCGc -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 28743 | 0.72 | 0.567483 |
Target: 5'- cCGAGAUGCGCacggccgcuggagCGCGGGAuggacucGAGGCGg -3' miRNA: 3'- -GCUCUGCGCGga-----------GUGCUCUu------CUCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 5360 | 1.08 | 0.002634 |
Target: 5'- cCGAGACGCGCCUCACGAGAAGAGGCGc -3' miRNA: 3'- -GCUCUGCGCGGAGUGCUCUUCUCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 49858 | 0.66 | 0.842449 |
Target: 5'- --cGACGCGCuCUU-CGAGGAG-GGUGg -3' miRNA: 3'- gcuCUGCGCG-GAGuGCUCUUCuCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 88429 | 0.72 | 0.523905 |
Target: 5'- uCGAGGCGCGaCUCA-GGGAgauGGAGGCc -3' miRNA: 3'- -GCUCUGCGCgGAGUgCUCU---UCUCCGc -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 8501 | 0.68 | 0.763293 |
Target: 5'- gCGAGACGCGCggcccCUcCACGuucGAAGcGGGCa -3' miRNA: 3'- -GCUCUGCGCG-----GA-GUGCu--CUUC-UCCGc -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 56448 | 0.66 | 0.858161 |
Target: 5'- aCGAcGACcaacgaGCGCCUCG-GGGAAGugauGGCGu -3' miRNA: 3'- -GCU-CUG------CGCGGAGUgCUCUUCu---CCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 65329 | 0.66 | 0.880203 |
Target: 5'- cCGcGGCGUGCCguUCGCGcGGgcGAuGGCGg -3' miRNA: 3'- -GCuCUGCGCGG--AGUGC-UCuuCU-CCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 117770 | 0.72 | 0.533707 |
Target: 5'- gGAGugGCcacgaggaggaGUCUCugGAgGAAGAGGUGa -3' miRNA: 3'- gCUCugCG-----------CGGAGugCU-CUUCUCCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 109156 | 0.67 | 0.80882 |
Target: 5'- -uGGACaGcCGCCgCACGGGGAGAgauGGCGa -3' miRNA: 3'- gcUCUG-C-GCGGaGUGCUCUUCU---CCGC- -5' |
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2874 | 5' | -56.9 | NC_001493.1 | + | 45064 | 0.67 | 0.799997 |
Target: 5'- gCGAGAuauuUGCGCC-CugGAGAAacGGGCa -3' miRNA: 3'- -GCUCU----GCGCGGaGugCUCUUc-UCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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