miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 3' -57.5 NC_006146.1 + 152632 0.67 0.82657
Target:  5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3'
miRNA:   3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5'
28742 3' -57.5 NC_006146.1 + 157759 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28742 3' -57.5 NC_006146.1 + 151604 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28742 3' -57.5 NC_006146.1 + 148526 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28742 3' -57.5 NC_006146.1 + 145448 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28742 3' -57.5 NC_006146.1 + 142370 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28742 3' -57.5 NC_006146.1 + 91763 0.66 0.850775
Target:  5'- uUCUUGGGUgggugCCuGGGgUGCCGUgcugGCa -3'
miRNA:   3'- -AGGACCCA-----GGuCCCgGCGGUAaua-CG- -5'
28742 3' -57.5 NC_006146.1 + 154682 0.67 0.83482
Target:  5'- gCCUGGGagUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC--AGGUCCCGg----CGGuaauACG- -5'
28742 3' -57.5 NC_006146.1 + 155709 0.67 0.82657
Target:  5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3'
miRNA:   3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5'
28742 3' -57.5 NC_006146.1 + 6444 0.66 0.865958
Target:  5'- cCCUgGGGUCCauGGGGCC-CCAa----- -3'
miRNA:   3'- aGGA-CCCAGG--UCCCGGcGGUaauacg -5'
28742 3' -57.5 NC_006146.1 + 27614 0.66 0.865958
Target:  5'- cUCC-GGGUCCAcuGGGUgGCCAg----- -3'
miRNA:   3'- -AGGaCCCAGGU--CCCGgCGGUaauacg -5'
28742 3' -57.5 NC_006146.1 + 142055 0.66 0.873246
Target:  5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3'
miRNA:   3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 57932 0.66 0.880324
Target:  5'- -gCUGG--CCGGcGCCGCCAUgGUGCu -3'
miRNA:   3'- agGACCcaGGUCcCGGCGGUAaUACG- -5'
28742 3' -57.5 NC_006146.1 + 166532 0.66 0.880324
Target:  5'- gCCUGGGgagCCcgcGGGGCCgugGCCAcgucGCu -3'
miRNA:   3'- aGGACCCa--GG---UCCCGG---CGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 118975 0.66 0.873246
Target:  5'- aCCgca--CCGGGGCCGCCcgUcgGUGCc -3'
miRNA:   3'- aGGacccaGGUCCCGGCGGuaA--UACG- -5'
28742 3' -57.5 NC_006146.1 + 157445 0.66 0.873246
Target:  5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3'
miRNA:   3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 154367 0.66 0.873246
Target:  5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3'
miRNA:   3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 151289 0.66 0.873246
Target:  5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3'
miRNA:   3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 148211 0.66 0.873246
Target:  5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3'
miRNA:   3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 145133 0.66 0.873246
Target:  5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3'
miRNA:   3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.