miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 3' -57.5 NC_006146.1 + 1148 0.71 0.606269
Target:  5'- cCCgcgaGGGUCCccGGGCCGCCccgggGCu -3'
miRNA:   3'- aGGa---CCCAGGu-CCCGGCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 2080 0.71 0.606269
Target:  5'- cCCgcgaGGGUCCccGGGCCGCCccgggGCu -3'
miRNA:   3'- aGGa---CCCAGGu-CCCGGCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 3012 0.71 0.606269
Target:  5'- cCCgcgaGGGUCCccGGGCCGCCccgggGCu -3'
miRNA:   3'- aGGa---CCCAGGu-CCCGGCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 5201 0.71 0.596211
Target:  5'- cCCUGGGcCUGGGGgaGCUAgggGUGCa -3'
miRNA:   3'- aGGACCCaGGUCCCggCGGUaa-UACG- -5'
28742 3' -57.5 NC_006146.1 + 6444 0.66 0.865958
Target:  5'- cCCUgGGGUCCauGGGGCC-CCAa----- -3'
miRNA:   3'- aGGA-CCCAGG--UCCCGGcGGUaauacg -5'
28742 3' -57.5 NC_006146.1 + 8284 0.67 0.818149
Target:  5'- cUCUGGGagccccacucCCGGGGUCGCUcucUGUGCu -3'
miRNA:   3'- aGGACCCa---------GGUCCCGGCGGua-AUACG- -5'
28742 3' -57.5 NC_006146.1 + 8516 0.67 0.818149
Target:  5'- aCCgGGGUCCcgggcgcGGGCgCGCCAagggGCu -3'
miRNA:   3'- aGGaCCCAGGu------CCCG-GCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 14838 0.7 0.63653
Target:  5'- gUCUcGGGcCCGGGGCCGCgGgag-GCc -3'
miRNA:   3'- -AGGaCCCaGGUCCCGGCGgUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 15039 0.71 0.586177
Target:  5'- gCCUGG--CCAGGGcCCGCCGggccUGCg -3'
miRNA:   3'- aGGACCcaGGUCCC-GGCGGUaau-ACG- -5'
28742 3' -57.5 NC_006146.1 + 24219 0.71 0.616347
Target:  5'- uUCUguUGGGgCCGGGGCCGCCcacc-GCc -3'
miRNA:   3'- -AGG--ACCCaGGUCCCGGCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 26286 0.7 0.676792
Target:  5'- gCCUGGGUggaGGGGCCGgCAUcUGgagGCg -3'
miRNA:   3'- aGGACCCAgg-UCCCGGCgGUA-AUa--CG- -5'
28742 3' -57.5 NC_006146.1 + 27614 0.66 0.865958
Target:  5'- cUCC-GGGUCCAcuGGGUgGCCAg----- -3'
miRNA:   3'- -AGGaCCCAGGU--CCCGgCGGUaauacg -5'
28742 3' -57.5 NC_006146.1 + 30382 0.66 0.842891
Target:  5'- cCCaGGG-CUagguuugcuguAGGGCCGCCAggugGCg -3'
miRNA:   3'- aGGaCCCaGG-----------UCCCGGCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 33099 0.67 0.80082
Target:  5'- cUCUGGGgcagCCGGguGGCCGCCGgcggGUu -3'
miRNA:   3'- aGGACCCa---GGUC--CCGGCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 33214 0.72 0.556297
Target:  5'- cUCCUGGuGcUCCGGGGCaGCCGggugGCc -3'
miRNA:   3'- -AGGACC-C-AGGUCCCGgCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 33244 0.68 0.791929
Target:  5'- gCCggcGGGUCCGccGGGCCGCUgccccGCu -3'
miRNA:   3'- aGGa--CCCAGGU--CCCGGCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 33320 0.7 0.676792
Target:  5'- gUCCUGGGgcUCCGGGGuCCGg----GUGCu -3'
miRNA:   3'- -AGGACCC--AGGUCCC-GGCgguaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 33366 0.68 0.745543
Target:  5'- gCCggUGGGUCCGccGGGCCGCUgccccGCu -3'
miRNA:   3'- aGG--ACCCAGGU--CCCGGCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 35603 0.67 0.83482
Target:  5'- cCCUGGGUCUguGGGcaGCUGCC-UUA-GCc -3'
miRNA:   3'- aGGACCCAGG--UCC--CGGCGGuAAUaCG- -5'
28742 3' -57.5 NC_006146.1 + 42623 0.67 0.82657
Target:  5'- gCCUGGGgCUcGGccGCCGCCGUgg-GCc -3'
miRNA:   3'- aGGACCCaGGuCC--CGGCGGUAauaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.