miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 3' -57.5 NC_006146.1 + 42839 0.67 0.80082
Target:  5'- aUCaGGGccUCgAGGGCCGCCAg---GCc -3'
miRNA:   3'- aGGaCCC--AGgUCCCGGCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 47396 0.7 0.66676
Target:  5'- gCCUGGGgucgaccguggCCAGGGCCaGCCuca--GCu -3'
miRNA:   3'- aGGACCCa----------GGUCCCGG-CGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 47762 0.67 0.809563
Target:  5'- cCCUGGcGaguacggccUCCAGGGCCGUCugaaaGCc -3'
miRNA:   3'- aGGACC-C---------AGGUCCCGGCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 49249 0.73 0.460768
Target:  5'- cUCC-GGGUCCAGGGCCGgUAgcccccUGUa -3'
miRNA:   3'- -AGGaCCCAGGUCCCGGCgGUaau---ACG- -5'
28742 3' -57.5 NC_006146.1 + 55044 0.68 0.773735
Target:  5'- gUCgGGG-CCGGGGCCuGCCAcag-GCg -3'
miRNA:   3'- aGGaCCCaGGUCCCGG-CGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 56233 0.66 0.871082
Target:  5'- gUCCagcGGGUCCgcgggggcggaggcGGGGCCGUCcucg-GCg -3'
miRNA:   3'- -AGGa--CCCAGG--------------UCCCGGCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 56648 0.67 0.809563
Target:  5'- gUCCagGGGUCCGucgaucGCCGCCGUc-UGCa -3'
miRNA:   3'- -AGGa-CCCAGGUcc----CGGCGGUAauACG- -5'
28742 3' -57.5 NC_006146.1 + 57932 0.66 0.880324
Target:  5'- -gCUGG--CCGGcGCCGCCAUgGUGCu -3'
miRNA:   3'- agGACCcaGGUCcCGGCGGUAaUACG- -5'
28742 3' -57.5 NC_006146.1 + 59255 0.69 0.68679
Target:  5'- gCCUGGGUguUCAGGGCCugGCCGa----- -3'
miRNA:   3'- aGGACCCA--GGUCCCGG--CGGUaauacg -5'
28742 3' -57.5 NC_006146.1 + 68939 0.72 0.526872
Target:  5'- gCCUGGGcCCAGGagaucuCCGCCGUUGUc- -3'
miRNA:   3'- aGGACCCaGGUCCc-----GGCGGUAAUAcg -5'
28742 3' -57.5 NC_006146.1 + 71247 0.66 0.880324
Target:  5'- cUCCUGGGgCCuggcggGGGGCgGCCucuacGCc -3'
miRNA:   3'- -AGGACCCaGG------UCCCGgCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 71456 0.74 0.413757
Target:  5'- cUCUGGGgauguggaacuguuUCCAGGGCCuGCCGUUuggccggugGUGCc -3'
miRNA:   3'- aGGACCC--------------AGGUCCCGG-CGGUAA---------UACG- -5'
28742 3' -57.5 NC_006146.1 + 76256 0.67 0.80082
Target:  5'- uUCgUGGuccCCAGGGCgGCCAUcAUGg -3'
miRNA:   3'- -AGgACCca-GGUCCCGgCGGUAaUACg -5'
28742 3' -57.5 NC_006146.1 + 91763 0.66 0.850775
Target:  5'- uUCUUGGGUgggugCCuGGGgUGCCGUgcugGCa -3'
miRNA:   3'- -AGGACCCA-----GGuCCCgGCGGUAaua-CG- -5'
28742 3' -57.5 NC_006146.1 + 95061 0.67 0.818149
Target:  5'- gUUUGuGGUCCAGaGCUGCCccugGUGCa -3'
miRNA:   3'- aGGAC-CCAGGUCcCGGCGGuaa-UACG- -5'
28742 3' -57.5 NC_006146.1 + 100899 0.68 0.791032
Target:  5'- gCCUGGGUCUcggccguGGGGUCcCCGaccGUGCu -3'
miRNA:   3'- aGGACCCAGG-------UCCCGGcGGUaa-UACG- -5'
28742 3' -57.5 NC_006146.1 + 105193 0.67 0.82657
Target:  5'- aCCgGGG-CCGGGGa-GCCGgggGUGCc -3'
miRNA:   3'- aGGaCCCaGGUCCCggCGGUaa-UACG- -5'
28742 3' -57.5 NC_006146.1 + 107402 0.75 0.390971
Target:  5'- ---aGGGUCCAGGGCUGCgGc-GUGCa -3'
miRNA:   3'- aggaCCCAGGUCCCGGCGgUaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 107623 0.68 0.764449
Target:  5'- aCCgGaGGUgCCAGGGCUGUCAUc-UGCc -3'
miRNA:   3'- aGGaC-CCA-GGUCCCGGCGGUAauACG- -5'
28742 3' -57.5 NC_006146.1 + 110007 0.69 0.716482
Target:  5'- cUCCUGGaUCCAcuGGGCCccagGCCGgucUGCa -3'
miRNA:   3'- -AGGACCcAGGU--CCCGG----CGGUaauACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.