miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 3' -57.5 NC_006146.1 + 151914 0.73 0.488597
Target:  5'- cUCCUcGGGUCC--GGCCGCCGgaggGCu -3'
miRNA:   3'- -AGGA-CCCAGGucCCGGCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 151815 0.69 0.706643
Target:  5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3'
miRNA:   3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 151604 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28742 3' -57.5 NC_006146.1 + 151289 0.66 0.873246
Target:  5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3'
miRNA:   3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 150197 1.12 0.001322
Target:  5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3'
miRNA:   3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5'
28742 3' -57.5 NC_006146.1 + 149554 0.67 0.82657
Target:  5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3'
miRNA:   3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5'
28742 3' -57.5 NC_006146.1 + 148836 0.73 0.488597
Target:  5'- cUCCUcGGGUCC--GGCCGCCGgaggGCu -3'
miRNA:   3'- -AGGA-CCCAGGucCCGGCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 148737 0.69 0.706643
Target:  5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3'
miRNA:   3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 148526 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28742 3' -57.5 NC_006146.1 + 148211 0.66 0.873246
Target:  5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3'
miRNA:   3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 147730 0.69 0.706643
Target:  5'- gCCUGGGUaauagcGGGCCGCgAgcgacucUGUGCa -3'
miRNA:   3'- aGGACCCAggu---CCCGGCGgUa------AUACG- -5'
28742 3' -57.5 NC_006146.1 + 147119 1.12 0.001322
Target:  5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3'
miRNA:   3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5'
28742 3' -57.5 NC_006146.1 + 146476 0.67 0.82657
Target:  5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3'
miRNA:   3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5'
28742 3' -57.5 NC_006146.1 + 145758 0.73 0.488597
Target:  5'- cUCCUcGGGUCC--GGCCGCCGgaggGCu -3'
miRNA:   3'- -AGGA-CCCAGGucCCGGCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 145707 0.66 0.880324
Target:  5'- gCCUGGGagCAGGaGCgCGUCAgcuugAUGUc -3'
miRNA:   3'- aGGACCCagGUCC-CG-GCGGUaa---UACG- -5'
28742 3' -57.5 NC_006146.1 + 145660 0.69 0.706643
Target:  5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3'
miRNA:   3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 145448 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28742 3' -57.5 NC_006146.1 + 145133 0.66 0.873246
Target:  5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3'
miRNA:   3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 144041 1.12 0.001322
Target:  5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3'
miRNA:   3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5'
28742 3' -57.5 NC_006146.1 + 143398 0.67 0.82657
Target:  5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3'
miRNA:   3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.