Results 21 - 40 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28742 | 3' | -57.5 | NC_006146.1 | + | 55044 | 0.68 | 0.773735 |
Target: 5'- gUCgGGG-CCGGGGCCuGCCAcag-GCg -3' miRNA: 3'- aGGaCCCaGGUCCCGG-CGGUaauaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 33366 | 0.68 | 0.745543 |
Target: 5'- gCCggUGGGUCCGccGGGCCGCUgccccGCu -3' miRNA: 3'- aGG--ACCCAGGU--CCCGGCGGuaauaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 33320 | 0.7 | 0.676792 |
Target: 5'- gUCCUGGGgcUCCGGGGuCCGg----GUGCu -3' miRNA: 3'- -AGGACCC--AGGUCCC-GGCgguaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 68939 | 0.72 | 0.526872 |
Target: 5'- gCCUGGGcCCAGGagaucuCCGCCGUUGUc- -3' miRNA: 3'- aGGACCCaGGUCCc-----GGCGGUAAUAcg -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 136101 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135451 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 170064 | 0.69 | 0.716482 |
Target: 5'- ---aGGGcCCGGGGCCGCgCGUggggAUGg -3' miRNA: 3'- aggaCCCaGGUCCCGGCG-GUAa---UACg -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 49249 | 0.73 | 0.460768 |
Target: 5'- cUCC-GGGUCCAGGGCCGgUAgcccccUGUa -3' miRNA: 3'- -AGGaCCCAGGUCCCGGCgGUaau---ACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135358 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 71456 | 0.74 | 0.413757 |
Target: 5'- cUCUGGGgauguggaacuguuUCCAGGGCCuGCCGUUuggccggugGUGCc -3' miRNA: 3'- aGGACCC--------------AGGUCCCGG-CGGUAA---------UACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 115507 | 0.69 | 0.735941 |
Target: 5'- gUCCUgGGGUCCcGGaGCagcguGCCAUUGcGCu -3' miRNA: 3'- -AGGA-CCCAGGuCC-CGg----CGGUAAUaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 137790 | 0.68 | 0.777416 |
Target: 5'- gCCU-GGUCCgccggauccgcuucgGGGGuCCGCCGguccgGUGCa -3' miRNA: 3'- aGGAcCCAGG---------------UCCC-GGCGGUaa---UACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 167268 | 0.69 | 0.716482 |
Target: 5'- ---aGGGcCCGGGGCCGCgCGUggggAUGg -3' miRNA: 3'- aggaCCCaGGUCCCGGCG-GUAa---UACg -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 153208 | 0.69 | 0.68679 |
Target: 5'- gCUUGGccgCCAcGGGCCGCCcgUAgaUGCc -3' miRNA: 3'- aGGACCca-GGU-CCCGGCGGuaAU--ACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 114171 | 0.71 | 0.616347 |
Target: 5'- cCCUGGGcagCAGGGUCaCCAUgAUGCa -3' miRNA: 3'- aGGACCCag-GUCCCGGcGGUAaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 33214 | 0.72 | 0.556297 |
Target: 5'- cUCCUGGuGcUCCGGGGCaGCCGggugGCc -3' miRNA: 3'- -AGGACC-C-AGGUCCCGgCGGUaauaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 136473 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 136194 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135822 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135544 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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