miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 3' -57.5 NC_006146.1 + 121481 0.71 0.606269
Target:  5'- gCC-GGGUCCaucgugGGGGCCGCCAa----- -3'
miRNA:   3'- aGGaCCCAGG------UCCCGGCGGUaauacg -5'
28742 3' -57.5 NC_006146.1 + 1148 0.71 0.606269
Target:  5'- cCCgcgaGGGUCCccGGGCCGCCccgggGCu -3'
miRNA:   3'- aGGa---CCCAGGu-CCCGGCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 2080 0.71 0.606269
Target:  5'- cCCgcgaGGGUCCccGGGCCGCCccgggGCu -3'
miRNA:   3'- aGGa---CCCAGGu-CCCGGCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 114171 0.71 0.616347
Target:  5'- cCCUGGGcagCAGGGUCaCCAUgAUGCa -3'
miRNA:   3'- aGGACCCag-GUCCCGGcGGUAaUACG- -5'
28742 3' -57.5 NC_006146.1 + 24219 0.71 0.616347
Target:  5'- uUCUguUGGGgCCGGGGCCGCCcacc-GCc -3'
miRNA:   3'- -AGG--ACCCaGGUCCCGGCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 14838 0.7 0.63653
Target:  5'- gUCUcGGGcCCGGGGCCGCgGgag-GCc -3'
miRNA:   3'- -AGGaCCCaGGUCCCGGCGgUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 110161 0.7 0.64662
Target:  5'- gUCUUGGcggaucucuGUCCAGGGCCucagcGCCGguuggagAUGCg -3'
miRNA:   3'- -AGGACC---------CAGGUCCCGG-----CGGUaa-----UACG- -5'
28742 3' -57.5 NC_006146.1 + 47396 0.7 0.66676
Target:  5'- gCCUGGGgucgaccguggCCAGGGCCaGCCuca--GCu -3'
miRNA:   3'- aGGACCCa----------GGUCCCGG-CGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 33320 0.7 0.676792
Target:  5'- gUCCUGGGgcUCCGGGGuCCGg----GUGCu -3'
miRNA:   3'- -AGGACCC--AGGUCCC-GGCgguaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 26286 0.7 0.676792
Target:  5'- gCCUGGGUggaGGGGCCGgCAUcUGgagGCg -3'
miRNA:   3'- aGGACCCAgg-UCCCGGCgGUA-AUa--CG- -5'
28742 3' -57.5 NC_006146.1 + 153208 0.69 0.68679
Target:  5'- gCUUGGccgCCAcGGGCCGCCcgUAgaUGCc -3'
miRNA:   3'- aGGACCca-GGU-CCCGGCGGuaAU--ACG- -5'
28742 3' -57.5 NC_006146.1 + 59255 0.69 0.68679
Target:  5'- gCCUGGGUguUCAGGGCCugGCCGa----- -3'
miRNA:   3'- aGGACCCA--GGUCCCGG--CGGUaauacg -5'
28742 3' -57.5 NC_006146.1 + 147730 0.69 0.706643
Target:  5'- gCCUGGGUaauagcGGGCCGCgAgcgacucUGUGCa -3'
miRNA:   3'- aGGACCCAggu---CCCGGCGgUa------AUACG- -5'
28742 3' -57.5 NC_006146.1 + 142582 0.69 0.706643
Target:  5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3'
miRNA:   3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 145660 0.69 0.706643
Target:  5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3'
miRNA:   3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 148737 0.69 0.706643
Target:  5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3'
miRNA:   3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 151815 0.69 0.706643
Target:  5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3'
miRNA:   3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 154893 0.69 0.706643
Target:  5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3'
miRNA:   3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 157971 0.69 0.706643
Target:  5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3'
miRNA:   3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 110007 0.69 0.716482
Target:  5'- cUCCUGGaUCCAcuGGGCCccagGCCGgucUGCa -3'
miRNA:   3'- -AGGACCcAGGU--CCCGG----CGGUaauACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.